PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016516182.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HB-other

Protein Properties

Length: 339aa MW: 38440.3 Da PI: 4.9289

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016516182.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	30.7	5.3e-10	275	322	6	53
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 +++k qle+Le+++++++ p+ +++ + + ++L+ ++V WF rR XP_016516182.1 275 RIKKVQLETLEQVYRRSKRPTNAMINSIVHVTNLPRKRVLKWFEDRRS 322 68899******************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.993	267	327	IPR001356	Homeobox domain
SuperFamily	SSF46689	7.27E-10	269	328	IPR009057	Homeodomain-like
CDD	cd00086	5.09E-7	270	321	No hit	No description
SMART	SM00389	2.2E-4	273	331	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.9E-9	275	324	IPR009057	Homeodomain-like
Pfam	PF00046	1.5E-7	275	322	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MASASTTLRI SITLRCSTND LHLLAGQPRS RTNVVLPLHS SSSRPSSSVL TFSRRRSNSA 60 NSAITSSKKK KKSPPTIDTE ENGDIDEDAF EALFQLLEED LKNDDLSLND DDISEEDLAK 120 LERELEEALK DDELLGEIAS IANEKIESED EDEEVVANDD NEDDKDEELP VKLKNWQLKK 180 LGYALRKGRR KTNIKNLAAE LCLDRAIVLE LLRNPPPNLL LLSDALPDEP APRMIEPESK 240 PQETVPIEIS DVARLEAKVE TPVHVMQSSW SAQKRIKKVQ LETLEQVYRR SKRPTNAMIN 300 SIVHVTNLPR KRVLKWFEDR RSEEGVPDHR RPYQPLSKS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	53	71	RRRSNSANSAITSSKKKKK

Functional Description ? help Back to Top
Source	Description
UniProt	May modulate chromatin structure by regulation of nucleosome assembly/disassembly (By similarity). Homeodomain transcription factor that mediates jasmonic acid (JA)-mediated COI1-dependent and abscisic acid (ABA)-mediated PMR4-dependent resistance to infection by necrotrophic fungal pathogens (e.g. B.cinerea and P.cucumerina) and bacterial pathogens (e.g. P.syringae DC3000); this resistance involves at least callose deposition (PubMed:15923348, PubMed:20836879, PubMed:21564353). Required for the P.fluorescens WCS417r-triggered JA-dependent induced systemic resistance (ISR) against both P.syringae DC3000 and H.arabidopsidis (PubMed:20836879). Negative regulator of the ABA-dependent drought resistance (PubMed:19175769). {ECO:0000250\|UniProtKB:Q70Z19, ECO:0000269\|PubMed:15923348, ECO:0000269\|PubMed:19175769, ECO:0000269\|PubMed:20836879, ECO:0000269\|PubMed:21564353}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Constitutively expressed in healthy plants but repressed in response to infection by necrotrophic fungi (PubMed:15923348). Repressed by drought and abscisic acid (ABA) (PubMed:19175769). {ECO:0000269\|PubMed:15923348, ECO:0000269\|PubMed:19175769}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP009265	1e-109	AP009265.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0027D09, complete sequence.
GenBank	HG975520	1e-109	HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016516179.1	0.0	PREDICTED: protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3-like isoform X1
Refseq	XP_016516180.1	0.0	PREDICTED: protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3-like isoform X1
Refseq	XP_016516182.1	0.0	PREDICTED: protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3-like isoform X1
Swissprot	Q8H0V5	9e-77	OCP3_ARATH; Protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
TrEMBL	A0A1S4DSQ6	0.0	A0A1S4DSQ6_TOBAC; protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3-like isoform X1
STRING	XP_009768311.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11270.1	2e-53	overexpressor of cationic peroxidase 3

Publications ? help Back to Top
García-Andrade J,Ramírez V,López A,Vera P Mediated plastid RNA editing in plant immunity. PLoS Pathog., 2013. 9(10): p. e1003713 [PMID:24204264] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gamir J,Pastor V,Kaever A,Cerezo M,Flors V Targeting novel chemical and constitutive primed metabolites against Plectosphaerella cucumerina. Plant J., 2014. 78(2): p. 227-40 [PMID:24506441]