PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016516112.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 413aa MW: 46530.2 Da PI: 6.7946

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016516112.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.9	4.8e-33	44	98	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wt +LHerF+eav+qLGG++kAtPk++l+lm+++gLtl+h+kSHLQkYRl XP_016516112.1 44 KPRLKWTADLHERFIEAVNQLGGADKATPKSVLKLMGIQGLTLYHLKSHLQKYRL 98 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.925	41	101	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	8.2E-31	42	99	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.68E-16	43	99	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-23	44	99	IPR006447	Myb domain, plants
Pfam	PF00249	7.1E-10	46	97	IPR001005	SANT/Myb domain
Pfam	PF14379	6.5E-25	142	188	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MYHQHHQTAN MHPSTRMSFP ERHLFLQGGN VNGDSGLVLS TDAKPRLKWT ADLHERFIEA 60 VNQLGGADKA TPKSVLKLMG IQGLTLYHLK SHLQKYRLSK NLHGQANISG VNKAAGIEKI 120 CESTGTPMSH PSIGPQPNNN IPINEAIQMQ IEVQRRLHEQ LEVQRHLQLR IEAQGKYLQA 180 VLEKAQETLG TQNLGTIGLE AAKDQLSDLV SKVSNQCLNS AFSEIKELSG FHNPQTQAIP 240 PADCSMDSCL TSSERPLRDL REMHNNQIGL RPLNFGPCTK DIENETRLQQ TELRWRDDLK 300 ENRKLFPKMD GDSEKEFTKE TNWSNLSMDI GLQGERRNVS SSYFDGRLNG IDADIKRFHQ 360 DADRSDSMKP EKQMSSQGYE LPYFAPKLDL NTDDQTDAAS SCKQLDLNGF SWS

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MYHQHHQTAN MHPSTRMSFP ERHLFLQGGN VNGDSGLVLS TDAKPRLKWT ADLHERFIEA  60
VNQLGGADKA TPKSVLKLMG IQGLTLYHLK SHLQKYRLSK NLHGQANISG VNKAAGIEKI  120
CESTGTPMSH PSIGPQPNNN IPINEAIQMQ IEVQRRLHEQ LEVQRHLQLR IEAQGKYLQA  180
VLEKAQETLG TQNLGTIGLE AAKDQLSDLV SKVSNQCLNS AFSEIKELSG FHNPQTQAIP  240
PADCSMDSCL TSSERPLRDL REMHNNQIGL RPLNFGPCTK DIENETRLQQ TELRWRDDLK  300
ENRKLFPKMD GDSEKEFTKE TNWSNLSMDI GLQGERRNVS SSYFDGRLNG IDADIKRFHQ  360
DADRSDSMKP EKQMSSQGYE LPYFAPKLDL NTDDQTDAAS SCKQLDLNGF SWS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-21	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-21	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-21	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-21	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-21	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-21	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-21	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-21	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-21	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-21	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-21	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-21	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975449	0.0	HG975449.1 Solanum pennellii chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009770705.1	0.0	PREDICTED: uncharacterized protein LOC104221350 isoform X2
Refseq	XP_016516112.1	0.0	PREDICTED: uncharacterized protein LOC107832752 isoform X2
Swissprot	Q9SQQ9	1e-124	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A1S4DRS2	0.0	A0A1S4DRS2_TOBAC; uncharacterized protein LOC107832752 isoform X2
TrEMBL	A0A1U7W8X8	0.0	A0A1U7W8X8_NICSY; uncharacterized protein LOC104221350 isoform X2
STRING	XP_009770704.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-115	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]