PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016516066.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 167aa MW: 19235.8 Da PI: 10.128 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.4 | 5.5e-05 | 26 | 48 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C++ F++ L H+++H XP_016516066.1 26 YKCSFCKREFRSAQALGGHMNVH 48 9********************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.21E-7 | 22 | 52 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 5.1E-5 | 23 | 51 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.427 | 26 | 53 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.3E-7 | 26 | 49 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0024 | 26 | 48 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 28 | 48 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 167 aa Download sequence Send to blast |
MEKMKFKENT HIEVWDSASI WPERDYKCSF CKREFRSAQA LGGHMNVHRR DRAKLRLLHY 60 SPSPSCDNVN SSQKKPNHNP TISSSSSSSS PRFNFTGSYL KGDVAKSTLS KKVSLGVKQP 120 ADFAKRNNEN RVWKKREFVT LDFNMGLIQT KEDLDMDLDL ELRLGYS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 2e-12 | 21 | 48 | 2 | 29 | superman protein |
2l1o_A | 2e-12 | 21 | 48 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009625207.1 | 1e-123 | PREDICTED: transcriptional regulator SUPERMAN-like | ||||
Refseq | XP_016516066.1 | 1e-123 | PREDICTED: transcriptional regulator SUPERMAN-like | ||||
TrEMBL | A0A1S4DRK5 | 1e-122 | A0A1S4DRK5_TOBAC; transcriptional regulator SUPERMAN-like | ||||
STRING | XP_009625207.1 | 1e-122 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2110 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G23130.1 | 2e-19 | C2H2 family protein |