PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016516016.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 237aa    MW: 26491.3 Da    PI: 6.1614
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016516016.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.52.6e-213988255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae Aa+a+++a++k++g
  XP_016516016.1 39 RYRGVRQRP-WGKWAAEIRDPY----KaTRVWLGTFDTAEAAARAYDEAALKFRG 88
                    7********.**********76....35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-143988IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-333997IPR001471AP2/ERF domain
SMARTSM003803.6E-3939102IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-233998IPR016177DNA-binding domain
PROSITE profilePS5103225.6733996IPR001471AP2/ERF domain
PRINTSPR003673.0E-124051IPR001471AP2/ERF domain
CDDcd000181.04E-164798No hitNo description
PRINTSPR003673.0E-126278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MVAPPTTTST TTTTTTAAQT PPEPAEGGGA EETGERRRRY RGVRQRPWGK WAAEIRDPYK  60
ATRVWLGTFD TAEAAARAYD EAALKFRGSK AKLNFPENVK LLPSPVLSDS PNTLYSVSSS  120
PDPIVYTSLY RPNFIEYPLR DDKPIVHTSQ YRSNFIERPQ TDEPILHTSH HQALNNSADL  180
NDQTFTNDDE FHRLHLPYFP NMFLSPIQPQ VHIQPNASQS ELVTEALAPP SSSSAPE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-234099666ATERF1
3gcc_A7e-234099666ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13439ERRRRY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT9904891e-50CT990489.3 S.lycopersicum DNA sequence from clone LE_HBa-20F17 on chromosome 4, complete sequence.
GenBankHG9754431e-50HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBankHG9755161e-50HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016516016.11e-175PREDICTED: ethylene-responsive transcription factor RAP2-6-like
TrEMBLA0A1S4DRF81e-173A0A1S4DRF8_TOBAC; ethylene-responsive transcription factor RAP2-6-like
STRINGXP_009781057.11e-129(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.11e-24related to AP2 6