PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016515948.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 485aa    MW: 54625.6 Da    PI: 6.2042
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016515948.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.13.2e-34141062103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k+ye+++d ++++++sws+++nsfvv++  ef++++LpkyFkh+nf+SFvRQLn+Yg++kv+ +          weF+++ F +g+k+ll++
  XP_016515948.1  14 FLCKTYEMVDDLSTDSVVSWSKSNNSFVVWNVLEFSRDILPKYFKHNNFSSFVRQLNTYGYRKVDPDC---------WEFANEGFLRGHKHLLKT 99 
                     9***************************************************************9987.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i r+k +
  XP_016515948.1 100 ISRRKPS 106
                     ****976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.2E-36898IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.26E-339103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.0E-5910103IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.6E-3014103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.0E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.0E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.0E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MEAIHEIGNS PPPFLCKTYE MVDDLSTDSV VSWSKSNNSF VVWNVLEFSR DILPKYFKHN  60
NFSSFVRQLN TYGYRKVDPD CWEFANEGFL RGHKHLLKTI SRRKPSQMQV HQDTASQVQS  120
VSVESCVEVG KFGIEEEVER LKRDKSIHME ELVKLKQQQQ ATDHCLENVG QRLHLMEQRE  180
QQTMSFLAKA LQSPGFIAEL IHQHNEGNRR IHGMKKKRRF PNQEEEIYAG KPVSTLHDRQ  240
IVRYQPLMNE AAKALLQKIL KTNASGWLET KVKNTNGFLT SHGHAFENTL DSAGICSHIS  300
GVTLPQLPTS SQSHLTSDSG FPFNSNLSAI PEIQYSPGLI PGEAKVPHFP GLNALNFQID  360
HVLPEVSEGH GINILDNFGI TDLKRSGTGD LPDIDRMQGI VDGVTSVVPD RFSTDTDIDV  420
FFDEMPKLPG INDIFWDHIL STSPLTGDKH EIGSLALEDG LAKEEDVPGI QESAFDKKKH  480
MSYLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-231210327129Heat shock factor protein 1
5d5v_B3e-231210327129Heat shock factor protein 1
5d5v_D3e-231210327129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1214218KKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016515948.10.0PREDICTED: heat stress transcription factor A-1-like isoform X2
TrEMBLA0A1S4DR970.0A0A1S4DR97_TOBAC; heat stress transcription factor A-1-like isoform X2
STRINGXP_009596927.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-115heat shock factor 3