PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016515947.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HSF | ||||||||
Protein Properties | Length: 517aa MW: 58271.8 Da PI: 6.1792 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 98.9 | 4.8e-31 | 14 | 138 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT...................... CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks...................... 74 Fl k+ye+++d ++++++sws+++nsfvv++ ef++++LpkyFkh+nf+SFvRQLn+Y ++ + + ++ XP_016515947.1 14 FLCKTYEMVDDLSTDSVVSWSKSNNSFVVWNVLEFSRDILPKYFKHNNFSSFVRQLNTYVQSNKSMMGRWEMGvsfnhdegiiflciavytgyrk 108 9**********************************************************877766666554448999999999999988877765 PP .XTTSEEEEESXXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 75 .kekiweFkhksFkkgkkellekikrkkse 103 +++ weF+++ F +g+k+ll++i r+k + XP_016515947.1 109 vDPDCWEFANEGFLRGHKHLLKTISRRKPS 138 449************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 3.67E-28 | 9 | 135 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 2.3E-33 | 10 | 135 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 5.9E-48 | 10 | 135 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.3E-26 | 14 | 135 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.2E-14 | 14 | 37 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.2E-14 | 52 | 64 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.2E-14 | 65 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 517 aa Download sequence Send to blast |
MEAIHEIGNS PPPFLCKTYE MVDDLSTDSV VSWSKSNNSF VVWNVLEFSR DILPKYFKHN 60 NFSSFVRQLN TYVQSNKSMM GRWEMGVSFN HDEGIIFLCI AVYTGYRKVD PDCWEFANEG 120 FLRGHKHLLK TISRRKPSQM QVHQDTASQV QSVSVESCVE VGKFGIEEEV ERLKRDKSIH 180 MEELVKLKQQ QQATDHCLEN VGQRLHLMEQ REQQTMSFLA KALQSPGFIA ELIHQHNEGN 240 RRIHGMKKKR RFPNQEEEIY AGKPVSTLHD RQIVRYQPLM NEAAKALLQK ILKTNASGWL 300 ETKVKNTNGF LTSHGHAFEN TLDSAGICSH ISGVTLPQLP TSSQSHLTSD SGFPFNSNLS 360 AIPEIQYSPG LIPGEAKVPH FPGLNALNFQ IDHVLPEVSE GHGINILDNF GITDLKRSGT 420 GDLPDIDRMQ GIVDGVTSVV PDRFSTDTDI DVFFDEMPKL PGINDIFWDH ILSTSPLTGD 480 KHEIGSLALE DGLAKEEDVP GIQESAFDKK KHMSYLT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 5e-18 | 12 | 135 | 27 | 129 | Heat shock factor protein 1 |
5d5v_B | 5e-18 | 12 | 135 | 27 | 129 | Heat shock factor protein 1 |
5d5v_D | 5e-18 | 12 | 135 | 27 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 246 | 250 | KKKRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016515943.1 | 0.0 | PREDICTED: heat stress transcription factor A-1-like isoform X1 | ||||
Refseq | XP_016515944.1 | 0.0 | PREDICTED: heat stress transcription factor A-1-like isoform X1 | ||||
Refseq | XP_016515945.1 | 0.0 | PREDICTED: heat stress transcription factor A-1-like isoform X1 | ||||
Refseq | XP_016515946.1 | 0.0 | PREDICTED: heat stress transcription factor A-1-like isoform X1 | ||||
Refseq | XP_016515947.1 | 0.0 | PREDICTED: heat stress transcription factor A-1-like isoform X1 | ||||
TrEMBL | A0A1S4DR96 | 0.0 | A0A1S4DR96_TOBAC; heat stress transcription factor A-1-like isoform X1 | ||||
STRING | XP_009596927.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16820.2 | 1e-108 | heat shock factor 3 |