PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016515945.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 517aa    MW: 58271.8 Da    PI: 6.1792
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016515945.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind98.94.8e-31141382103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT...................... CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks...................... 74 
                     Fl k+ye+++d ++++++sws+++nsfvv++  ef++++LpkyFkh+nf+SFvRQLn+Y  ++ +   + ++                       
  XP_016515945.1  14 FLCKTYEMVDDLSTDSVVSWSKSNNSFVVWNVLEFSRDILPKYFKHNNFSSFVRQLNTYVQSNKSMMGRWEMGvsfnhdegiiflciavytgyrk 108
                     9**********************************************************877766666554448999999999999988877765 PP

                     .XTTSEEEEESXXXXXXXXXXXXXXXXXXX CS
    HSF_DNA-bind  75 .kekiweFkhksFkkgkkellekikrkkse 103
                      +++ weF+++ F +g+k+ll++i r+k +
  XP_016515945.1 109 vDPDCWEFANEGFLRGHKHLLKTISRRKPS 138
                     449************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.67E-289135IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.3E-3310135IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.9E-4810135IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.3E-2614135IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.2E-141437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.2E-145264IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.2E-146577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MEAIHEIGNS PPPFLCKTYE MVDDLSTDSV VSWSKSNNSF VVWNVLEFSR DILPKYFKHN  60
NFSSFVRQLN TYVQSNKSMM GRWEMGVSFN HDEGIIFLCI AVYTGYRKVD PDCWEFANEG  120
FLRGHKHLLK TISRRKPSQM QVHQDTASQV QSVSVESCVE VGKFGIEEEV ERLKRDKSIH  180
MEELVKLKQQ QQATDHCLEN VGQRLHLMEQ REQQTMSFLA KALQSPGFIA ELIHQHNEGN  240
RRIHGMKKKR RFPNQEEEIY AGKPVSTLHD RQIVRYQPLM NEAAKALLQK ILKTNASGWL  300
ETKVKNTNGF LTSHGHAFEN TLDSAGICSH ISGVTLPQLP TSSQSHLTSD SGFPFNSNLS  360
AIPEIQYSPG LIPGEAKVPH FPGLNALNFQ IDHVLPEVSE GHGINILDNF GITDLKRSGT  420
GDLPDIDRMQ GIVDGVTSVV PDRFSTDTDI DVFFDEMPKL PGINDIFWDH ILSTSPLTGD  480
KHEIGSLALE DGLAKEEDVP GIQESAFDKK KHMSYLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-181213527129Heat shock factor protein 1
5d5v_B5e-181213527129Heat shock factor protein 1
5d5v_D5e-181213527129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1246250KKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016515943.10.0PREDICTED: heat stress transcription factor A-1-like isoform X1
RefseqXP_016515944.10.0PREDICTED: heat stress transcription factor A-1-like isoform X1
RefseqXP_016515945.10.0PREDICTED: heat stress transcription factor A-1-like isoform X1
RefseqXP_016515946.10.0PREDICTED: heat stress transcription factor A-1-like isoform X1
RefseqXP_016515947.10.0PREDICTED: heat stress transcription factor A-1-like isoform X1
TrEMBLA0A1S4DR960.0A0A1S4DR96_TOBAC; heat stress transcription factor A-1-like isoform X1
STRINGXP_009596927.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-108heat shock factor 3