PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016515570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 255aa MW: 27976.6 Da PI: 7.2384 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.4 | 3.3e-18 | 9 | 54 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd l ++v q+G+++W++I+ ++ gR++k+c++rw + XP_016515570.1 9 KGSWSPEEDAMLTKLVDQHGPRNWSLISTGIP-GRSGKSCRLRWCNQ 54 799*****************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 53.1 | 7.4e-17 | 63 | 105 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ed ++++a+ +G++ W+tIar ++ gRt++ +k++w++ XP_016515570.1 63 PFTPSEDAIILQAHVVHGNR-WATIARLLP-GRTDNAIKNHWNST 105 89******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.715 | 4 | 59 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.49E-30 | 7 | 102 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-15 | 8 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-17 | 9 | 54 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.3E-25 | 10 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.04E-14 | 11 | 53 | No hit | No description |
SMART | SM00717 | 1.3E-14 | 60 | 108 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 21.226 | 60 | 110 | IPR017930 | Myb domain |
Pfam | PF00249 | 5.9E-14 | 63 | 105 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.16E-12 | 63 | 106 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-22 | 63 | 109 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MDGTGEKIKG SWSPEEDAML TKLVDQHGPR NWSLISTGIP GRSGKSCRLR WCNQLSPAVQ 60 HRPFTPSEDA IILQAHVVHG NRWATIARLL PGRTDNAIKN HWNSTLRRKR HAPEAAAAAT 120 MLMALDESRT GSSSESNSKR QCSRASQEQS SCGLDTDDLG LNGPETSLTL SLPGGGLLHS 180 LSVDEEKVKD EVPPPINGDH KVKEEKCTVE MEETCLVTIM QRMIAHEVRC YIDKLRAQGG 240 LRIGPGFESD VPKQP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-39 | 6 | 109 | 1 | 104 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016515570.1 | 0.0 | PREDICTED: transcription factor MYB44-like | ||||
TrEMBL | A0A1S4DQ72 | 0.0 | A0A1S4DQ72_TOBAC; transcription factor MYB44-like | ||||
STRING | XP_009785340.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12883 | 16 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 3e-53 | myb domain protein 73 |