PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016515570.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 255aa    MW: 27976.6 Da    PI: 7.2384
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016515570.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.43.3e-18954147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd  l ++v q+G+++W++I+  ++ gR++k+c++rw + 
   XP_016515570.1  9 KGSWSPEEDAMLTKLVDQHGPRNWSLISTGIP-GRSGKSCRLRWCNQ 54
                     799*****************************.***********985 PP

2Myb_DNA-binding53.17.4e-1763105347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+ Ed ++++a+  +G++ W+tIar ++ gRt++ +k++w++ 
   XP_016515570.1  63 PFTPSEDAIILQAHVVHGNR-WATIARLLP-GRTDNAIKNHWNST 105
                      89******************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.715459IPR017930Myb domain
SuperFamilySSF466894.49E-307102IPR009057Homeodomain-like
SMARTSM007171.2E-15857IPR001005SANT/Myb domain
PfamPF002491.8E-17954IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-251062IPR009057Homeodomain-like
CDDcd001671.04E-141153No hitNo description
SMARTSM007171.3E-1460108IPR001005SANT/Myb domain
PROSITE profilePS5129421.22660110IPR017930Myb domain
PfamPF002495.9E-1463105IPR001005SANT/Myb domain
CDDcd001673.16E-1263106No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2263109IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MDGTGEKIKG SWSPEEDAML TKLVDQHGPR NWSLISTGIP GRSGKSCRLR WCNQLSPAVQ  60
HRPFTPSEDA IILQAHVVHG NRWATIARLL PGRTDNAIKN HWNSTLRRKR HAPEAAAAAT  120
MLMALDESRT GSSSESNSKR QCSRASQEQS SCGLDTDDLG LNGPETSLTL SLPGGGLLHS  180
LSVDEEKVKD EVPPPINGDH KVKEEKCTVE MEETCLVTIM QRMIAHEVRC YIDKLRAQGG  240
LRIGPGFESD VPKQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-3961091104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016515570.10.0PREDICTED: transcription factor MYB44-like
TrEMBLA0A1S4DQ720.0A0A1S4DQ72_TOBAC; transcription factor MYB44-like
STRINGXP_009785340.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128831620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.13e-53myb domain protein 73