PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016515494.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 434aa    MW: 48464.8 Da    PI: 8.6015
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016515494.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-18308358255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y GVr ++ +g+++AeIrd + ng   r++lg+f+t eeAa a+++a+ +++g
  XP_016515494.1 308 HYIGVRKRP-WGKYAAEIRDSTRNG--IRVWLGTFDTVEEAALAYDQAAFSMRG 358
                     799******.**********44465..*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.03E-27307366No hitNo description
SMARTSM003805.0E-34308372IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-22308367IPR016177DNA-binding domain
PfamPF008472.5E-13308358IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-28308367IPR001471AP2/ERF domain
PROSITE profilePS5103221.443308366IPR001471AP2/ERF domain
PRINTSPR003678.2E-9309320IPR001471AP2/ERF domain
PRINTSPR003678.2E-9332348IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MVNGVDFVMD SAVLGTFLGV LAEERRSITS REDLVLMEAL DSYTTINLPG IMIEHMQKVA  60
EFKDAKVGTR KQIFSKTTLE ECECIDKVGG VGNTFTISQL INAQNSDIDE IRKLKARNAI  120
LEGQLSQLQE APGSSSSQST EVARLTKENA DLRKQVEHLK EKVLNEQISA NSRMDILLKT  180
LASFSKPSPS NTKKFVYSEL INDHVDQIPR SSSISETNSS KGSSEEGSEE DRTGHPSHPT  240
KEVERGKKIP SFSRKGQITI FDQIPRSSSS SETNSSKGSS ADEEVTSYSI KRKDAEANKK  300
ELKDEEKHYI GVRKRPWGKY AAEIRDSTRN GIRVWLGTFD TVEEAALAYD QAAFSMRGPL  360
AFLNFPMEKV KESLQNINMN SNQLLDGLSP AAALKETHKI RMKNVKRRRN RKKKKAVLVF  420
EDLGADLLEE LLMS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-27307367161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016515494.10.0PREDICTED: uncharacterized protein LOC107832195
TrEMBLA0A1S4DQT70.0A0A1S4DQT7_TOBAC; uncharacterized protein LOC107832195
STRINGXP_009799481.11e-170(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.13e-39ethylene-responsive element binding factor 15