PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016515428.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 272aa MW: 29757.3 Da PI: 9.0668

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016515428.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.9	2.6e-39	69	128	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+ lkcprCdstntkfCy+nnysl+qPr+fCk+CrryWt+GGa+rnvPvGgg+r+nk+s+ XP_016515428.1 69 EAGLKCPRCDSTNTKFCYFNNYSLTQPRHFCKSCRRYWTRGGAMRNVPVGGGCRRNKRSK 128 6779*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-35	52	121	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.0E-32	71	126	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.627	72	126	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	74	110	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MIFSSFPVYL DHPNLQQLQQ PDHQQGNPGL ENPQLPPLPP PAQVGGGLGS IRPGSMVDRA 60 RMAKIPLPEA GLKCPRCDST NTKFCYFNNY SLTQPRHFCK SCRRYWTRGG AMRNVPVGGG 120 CRRNKRSKSS NNNNNISKST GGQMGNSNII ISTSASPSSC SMEIIGHQFS QPSTQFTPLM 180 AAFQNLNNYG EGFGTEMGFQ TGNNNNNNNL LPSLAANFEH TTNLYPFQVQ GESTIEASNG 240 VSQVAPPVKM ESNSTKQFLG SLENNQYWGF LV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016515428.1	0.0	PREDICTED: dof zinc finger protein DOF2.4-like
TrEMBL	A0A1S4DPS6	0.0	A0A1S4DPS6_TOBAC; dof zinc finger protein DOF2.4-like
STRING	XP_009620312.1	1e-152	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	3e-43	DNA binding with one finger 2.4