PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016515350.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | WRKY | ||||||||
Protein Properties | Length: 339aa MW: 38123.3 Da PI: 7.1777 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 105 | 4e-33 | 165 | 223 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fprsYYrCt+a+C vkk+vers +d+++v++tYeg+H+h+ XP_016515350.1 165 LDDGYRWRKYGQKAVKNNPFPRSYYRCTTASCGVKKRVERSIKDTSIVVTTYEGTHTHP 223 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.9E-34 | 150 | 225 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.71E-29 | 157 | 225 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.227 | 160 | 225 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-37 | 165 | 224 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-26 | 166 | 223 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MEKENKLKAE TSLENQTFSN QIPTSFSLPN IFDMLYETEK DSLDTIFGAH LLDYYNTTTT 60 PSIFDLLQTP LQTPLLIPPQ SLFTSISTTS TFQESSPVTP NSLSISSSSL EAADDDQQSN 120 TVKQKNEEQD QDKYKKQLKP KKKNVQKRQR EPRFAFMTKS EIDHLDDGYR WRKYGQKAVK 180 NNPFPRSYYR CTTASCGVKK RVERSIKDTS IVVTTYEGTH THPCPMTLRG STGVLPRTTA 240 YYGGAIGGGN GGGGTCSNSS LSIPQLQYYQ EQEQQTVLHF PTTTSHLNNF TVGYTSLFST 300 NSLEERRFSP SPYSSSLTGD DGLLHDMVSS QIRRDTKEE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-28 | 155 | 226 | 7 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 2e-28 | 155 | 226 | 7 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009621692.1 | 0.0 | PREDICTED: probable WRKY transcription factor 48 | ||||
Refseq | XP_016515350.1 | 0.0 | PREDICTED: probable WRKY transcription factor 48 | ||||
TrEMBL | A0A1S4DPK9 | 0.0 | A0A1S4DPK9_TOBAC; probable WRKY transcription factor 48 | ||||
STRING | XP_009621692.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1309 | 24 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49520.1 | 4e-44 | WRKY DNA-binding protein 48 |