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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_016515335.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family |
BBR-BPC |
Protein Properties |
Length: 301aa MW: 33563.6 Da PI: 7.9209 |
Description |
BBR-BPC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_016515335.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GAGA_bind | 311 | 4.1e-95 | 11 | 301 | 27 | 301 |
GAGA_bind 27 qlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla....salpvgvqvlsgtksidslqqlsep 117
m+++aerda+irern+al e+k a+aerdma lqrd+alaern+a+ erd++++al l e s++ +++g ++ sg+k+i + qq ++
XP_016515335.1 11 TYMAIMAERDAAIRERNMALEERKRAFAERDMAMLQRDAALAERNAAIQERDDAIAALRLGESSINdnnvVPDSPGNDTESGAKHIYNQQQ-MHK 104
569********************************************************99998887643444567777788888876555.667 PP
GAGA_bind 118 qledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader.................skaekksid 195
+++ a + +e + l + ++++e+k++kk +r+k+ +++k+ k ++++ ++ +++ +++ ++ + + +
XP_016515335.1 105 TIAEAAHGSTEDPTAGYL----KGTDTSEAKNPKKVRRPKESRHNKQAKIPRQGKIGAESLNMQVISTSsddwvnlqeldsdkegdMQLTSWKDN 195
777777774433322222....3344555556666666666666666666666666666666666553346678899999999999555544569 PP
GAGA_bind 196 lvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWA 290
l+ln++++Des++PvPvCsCtG+++ CYkWG GGWqSaCCtttiS+yPLP+ +++r +R++grKmS+gaf+klL++La++Gydls p+DLkdhWA
XP_016515335.1 196 LGLNQINFDESAMPVPVCSCTGTPQPCYKWGHGGWQSACCTTTISMYPLPQISNKRYSRVGGRKMSGGAFSKLLNRLADQGYDLSVPLDLKDHWA 290
*********************************************************************************************** PP
GAGA_bind 291 kHGtnkfvtir 301
kHGtn++ t++
XP_016515335.1 291 KHGTNRYSTLK 301
*******9986 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 301 aa
Download sequence Send
to blast |
MMDHNNFTIK TYMAIMAERD AAIRERNMAL EERKRAFAER DMAMLQRDAA LAERNAAIQE 60 RDDAIAALRL GESSINDNNV VPDSPGNDTE SGAKHIYNQQ QMHKTIAEAA HGSTEDPTAG 120 YLKGTDTSEA KNPKKVRRPK ESRHNKQAKI PRQGKIGAES LNMQVISTSS DDWVNLQELD 180 SDKEGDMQLT SWKDNLGLNQ INFDESAMPV PVCSCTGTPQ PCYKWGHGGW QSACCTTTIS 240 MYPLPQISNK RYSRVGGRKM SGGAFSKLLN RLADQGYDLS VPLDLKDHWA KHGTNRYSTL 300 K
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | FJ982301 | 0.0 | FJ982301.1 Nicotiana tabacum GAGA-binding transcriptional activator (BBR/BPC2) mRNA, complete cds. |