PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016515335.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family BBR-BPC
Protein Properties Length: 301aa    MW: 33563.6 Da    PI: 7.9209
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016515335.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind3114.1e-951130127301
       GAGA_bind  27 qlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla....salpvgvqvlsgtksidslqqlsep 117
                       m+++aerda+irern+al e+k a+aerdma lqrd+alaern+a+ erd++++al l e s++      +++g ++ sg+k+i + qq  ++
  XP_016515335.1  11 TYMAIMAERDAAIRERNMALEERKRAFAERDMAMLQRDAALAERNAAIQERDDAIAALRLGESSINdnnvVPDSPGNDTESGAKHIYNQQQ-MHK 104
                     569********************************************************99998887643444567777788888876555.667 PP

       GAGA_bind 118 qledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader.................skaekksid 195
                      +++ a + +e  +   l    + ++++e+k++kk +r+k+ +++k+ k  ++++   ++ +++  +++                 ++ +  + +
  XP_016515335.1 105 TIAEAAHGSTEDPTAGYL----KGTDTSEAKNPKKVRRPKESRHNKQAKIPRQGKIGAESLNMQVISTSsddwvnlqeldsdkegdMQLTSWKDN 195
                     777777774433322222....3344555556666666666666666666666666666666666553346678899999999999555544569 PP

       GAGA_bind 196 lvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWA 290
                     l+ln++++Des++PvPvCsCtG+++ CYkWG GGWqSaCCtttiS+yPLP+ +++r +R++grKmS+gaf+klL++La++Gydls p+DLkdhWA
  XP_016515335.1 196 LGLNQINFDESAMPVPVCSCTGTPQPCYKWGHGGWQSACCTTTISMYPLPQISNKRYSRVGGRKMSGGAFSKLLNRLADQGYDLSVPLDLKDHWA 290
                     *********************************************************************************************** PP

       GAGA_bind 291 kHGtnkfvtir 301
                     kHGtn++ t++
  XP_016515335.1 291 KHGTNRYSTLK 301
                     *******9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012263.8E-1062301IPR010409GAGA-binding transcriptional activator
PfamPF062176.3E-8310301IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MMDHNNFTIK TYMAIMAERD AAIRERNMAL EERKRAFAER DMAMLQRDAA LAERNAAIQE  60
RDDAIAALRL GESSINDNNV VPDSPGNDTE SGAKHIYNQQ QMHKTIAEAA HGSTEDPTAG  120
YLKGTDTSEA KNPKKVRRPK ESRHNKQAKI PRQGKIGAES LNMQVISTSS DDWVNLQELD  180
SDKEGDMQLT SWKDNLGLNQ INFDESAMPV PVCSCTGTPQ PCYKWGHGGW QSACCTTTIS  240
MYPLPQISNK RYSRVGGRKM SGGAFSKLLN RLADQGYDLS VPLDLKDHWA KHGTNRYSTL  300
K
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9823010.0FJ982301.1 Nicotiana tabacum GAGA-binding transcriptional activator (BBR/BPC2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016515335.10.0PREDICTED: barley B recombinant-like protein D
TrEMBLA0A1S4DPI30.0A0A1S4DPI3_TOBAC; barley B recombinant-like protein D
STRINGXP_009789611.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA80622230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.14e-83basic pentacysteine 6