PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016515329.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 201aa    MW: 23051.8 Da    PI: 8.4465
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016515329.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.39.5e-24957149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    krien   rqvtf+kRr+g+lKKA+ELSvLCdae+ + ifs +gk ye 
  XP_016515329.1  9 KRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLFIFSAHGKRYEL 57
                    79*******************************************9985 PP
2K-box55.32.9e-199117417100
           K-box  17 lqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                      + e++ Lk eie Lqr +  + G + ++++l eL++Le+ Le  + +iRs K+++++++i+ l++ke  lq +nk+L+ k+ee
  XP_016515329.1  91 PKGEINMLKHEIEVLQRGLSYMYGGGAGTMTLDELHSLEKYLELWMFHIRSAKMDIMFQEIQLLKNKEGILQAANKYLQDKIEE 174
                     56799****************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.4E-34160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.16E-26173IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.072161IPR002100Transcription factor, MADS-box
CDDcd002651.04E-37278No hitNo description
PRINTSPR004044.3E-26323IPR002100Transcription factor, MADS-box
PfamPF003194.2E-211055IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.75788178IPR002487Transcription factor, K-box
PfamPF014866.2E-2192172IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MARGKVQMKR IENPVHRQVT FCKRRAGLLK KAKELSVLCD AEIGLFIFSA HGKRYELATK  60
GTMQGLIEKY LKSTRGAEVA EEAKDIQALD PKGEINMLKH EIEVLQRGLS YMYGGGAGTM  120
TLDELHSLEK YLELWMFHIR SAKMDIMFQE IQLLKNKEGI LQAANKYLQD KIEEQYPVTN  180
MTSTLTDFQC PLTVQNEIFQ F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-15192191MEF2C
5f28_B1e-15192191MEF2C
5f28_C1e-15192191MEF2C
5f28_D1e-15192191MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that regulates root development by controlling cell proliferation in root meristem. May mediate responses to auxin in the root. May act as promoter of the flowering transition through up-regulation of SOC, FT and LFY. {ECO:0000269|PubMed:18203871}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin in root phloem. {ECO:0000269|PubMed:18203871}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0987370.0AY098737.2 Lycopersicon esculentum TAGL12 transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009593700.11e-149PREDICTED: agamous-like MADS-box protein AGL12
RefseqXP_016515329.11e-149PREDICTED: agamous-like MADS-box protein AGL12
SwissprotQ388411e-80AGL12_ARATH; Agamous-like MADS-box protein AGL12
TrEMBLA0A1S4DQC01e-148A0A1S4DQC0_TOBAC; agamous-like MADS-box protein AGL12
STRINGXP_009593700.11e-148(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA98102024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.14e-83AGAMOUS-like 12
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Pacheco-Escobedo MA, et al.
    Longitudinal zonation pattern in Arabidopsis root tip defined by a multiple structural change algorithm.
    Ann. Bot., 2018.
    [PMID:27358290]
  3. García-Cruz KV, et al.
    The MADS-box XAANTAL1 increases proliferation at the Arabidopsis root stem-cell niche and participates in transition to differentiation by regulating cell-cycle components.
    Ann. Bot., 2018.
    [PMID:27474508]