PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016515316.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 658aa MW: 75283.9 Da PI: 7.436 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24 | 9.1e-08 | 554 | 600 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqky 47 ++WT+eE+e+++d v+ + Wk + ++ +t+++++s+++++ XP_016515316.1 554 LSWTAEEEERFKDMVRSSSTSnnKWKNSKKLLP-SKTRNMLVSYYFNV 600 68**************99988999***999999.***********996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01014 | 7.6E-10 | 35 | 127 | No hit | No description |
PROSITE profile | PS51011 | 18.019 | 38 | 131 | IPR001606 | ARID DNA-binding domain |
SMART | SM00501 | 1.4E-14 | 39 | 132 | IPR001606 | ARID DNA-binding domain |
Gene3D | G3DSA:1.10.150.60 | 2.0E-14 | 41 | 132 | IPR001606 | ARID DNA-binding domain |
SuperFamily | SSF46774 | 4.06E-18 | 43 | 132 | IPR001606 | ARID DNA-binding domain |
Pfam | PF01388 | 5.8E-11 | 60 | 127 | IPR001606 | ARID DNA-binding domain |
PROSITE profile | PS51156 | 9.67 | 454 | 602 | IPR000949 | ELM2 domain |
CDD | cd00167 | 2.53E-4 | 555 | 601 | No hit | No description |
PROSITE profile | PS50090 | 6.005 | 555 | 601 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-4 | 555 | 600 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 658 aa Download sequence Send to blast |
MEAWSSLNDE SQVYKGNESG SGINLTVEVN GIDGCSKNRL KSLFDQVLSV FLSEVTEKKC 60 VRPLPVMTGS GKPLDLFKLY WIVRKIGGYD RVSSKNLWGF IAEHCGLDVG AVAFVKLVYV 120 KYLAEFDHWL RQLCKEGNLE KREGGVVRRL DLLSKELETR FRRLLLRRCQ KKKDANLLPS 180 KNGQVDFEML TTESVNKTND YTTRRSFNAE NRNGNLYNGD ERSVSKIDDD YVFLASAEGI 240 VEKVLYKAPE KSNNEYDDDE KFFARDIKNK VTSNGEVIQR AASAMSVIEN VFDSRKRKRE 300 SSCFSGMLNW INHAAKHSND PEIGEVPESS KWKGHTSNEF WFQVLLVKEA LLKRRHTDTN 360 AEESNPQQKK QRMHPFMYEE RLNNQPAEKL RCSKRIPVSP KHVPCPCCNS CSTSQNKAST 420 HQKEEEQDTG PDLTSIEVSV TEKTDDLGDQ QTHPEVSVGP LHQAEVPEWS GVISESDSKW 480 LGTRMWPPEV ETTKSLVELD PIGEGRRSSC GCRFPQSVEC IRFHIAEKRF KLKLELGPLF 540 NRWRFDRMGE EISLSWTAEE EERFKDMVRS SSTSNNKWKN SKKLLPSKTR NMLVSYYFNV 600 FLIRRRSYQN RVTPKELDSD DDEIELGSVG DSFGNIAVHV PSSRSLTCVE NKVCSDLE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 161 | 172 | RRLLLRRCQKKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ617181 | 2e-98 | AJ617181.1 Nicotiana plumbaginifolia cDNA-AFLP fragment, clone Np407. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016515315.1 | 0.0 | PREDICTED: AT-rich interactive domain-containing protein 2-like isoform X1 | ||||
Refseq | XP_016515316.1 | 0.0 | PREDICTED: AT-rich interactive domain-containing protein 2-like isoform X1 | ||||
Refseq | XP_016515317.1 | 0.0 | PREDICTED: AT-rich interactive domain-containing protein 2-like isoform X1 | ||||
Refseq | XP_016515318.1 | 0.0 | PREDICTED: AT-rich interactive domain-containing protein 2-like isoform X1 | ||||
Refseq | XP_016515319.1 | 0.0 | PREDICTED: AT-rich interactive domain-containing protein 2-like isoform X1 | ||||
Refseq | XP_016515320.1 | 0.0 | PREDICTED: AT-rich interactive domain-containing protein 2-like isoform X1 | ||||
TrEMBL | A0A1S4DPH3 | 0.0 | A0A1S4DPH3_TOBAC; AT-rich interactive domain-containing protein 2-like isoform X1 | ||||
STRING | XP_009591214.1 | 0.0 | (Nicotiana tomentosiformis) |