PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016515225.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 375aa    MW: 41408.6 Da    PI: 4.6871
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016515225.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22e-18105154255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+G+r+++ +g+W+AeIrdp++     r++lg+f +aeeAa+a+++ +++++g
  XP_016515225.1 105 QYRGIRQRP-WGKWAAEIRDPTK---GIRVWLGTFNSAEEAARAYDNEARRIRG 154
                     69*******.**********964...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-31105164IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-21105164IPR016177DNA-binding domain
PROSITE profilePS5103223.367105162IPR001471AP2/ERF domain
SMARTSM003807.9E-37105168IPR001471AP2/ERF domain
CDDcd000183.72E-32105163No hitNo description
PfamPF008471.3E-10106154IPR001471AP2/ERF domain
PRINTSPR003675.9E-11106117IPR001471AP2/ERF domain
PRINTSPR003675.9E-11128144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MCGGAILSDL VPPSRTSRRL TADLLWGTSD LSKKKKNPSN YHSKPLRSKL FDLDDEFEAD  60
FQDFKDYADD VDEVKAFALH GSKSVKSDDS SCDADKSSKR KRKNQYRGIR QRPWGKWAAE  120
IRDPTKGIRV WLGTFNSAEE AARAYDNEAR RIRGKKAKVN FPDEAPVSSS RRVVKLNPQE  180
ALHKESSNIV QANSTFTNNL GCGSDDSLSF VEEKPTAKQY GYEDMSFTVG DMGLSSFSPS  240
AGTNVYFNSD EGSNTFDCSD FGWGEPCSRS PEISSVLSAV LESNGTQFDE DASPEKKLKS  300
CSNNSLADDG NTVHKLSEEL SAFESQMKFL QIPYLEGNWD ASVDALLNAD ATQDGGNAMD  360
LWSFEDIPSL MGGVY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21105162260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009605490.10.0PREDICTED: ethylene-responsive transcription factor RAP2-12-like
RefseqXP_016515225.10.0PREDICTED: ethylene-responsive transcription factor RAP2-12-like
TrEMBLA0A1S4DP870.0A0A1S4DP87_TOBAC; ethylene-responsive transcription factor RAP2-12-like
STRINGXP_009605490.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14462466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.31e-54related to AP2 12