PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016514208.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 130aa MW: 14905.7 Da PI: 6.6699 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 37.6 | 3.8e-12 | 2 | 27 | 31 | 56 |
HHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 31 eeLAkklgLterqVkvWFqNrRakek 56 +LA++lgL+ rqV +W+qN+Ra++k XP_016514208.1 2 SQLAQELGLPPRQVAIWYQNKRARWK 27 69***********************9 PP | |||||||
2 | HD-ZIP_I/II | 79.2 | 6.6e-26 | 1 | 65 | 29 | 93 |
HD-ZIP_I/II 29 KvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 K++la+eLgl prqva+W+qn+RAR+k++ lE+dy+aL++++d+ +++nerL+ eve+L+eel++ XP_016514208.1 1 KSQLAQELGLPPRQVAIWYQNKRARWKSQSLEVDYKALQQRLDNAMSDNERLKLEVERLKEELNK 65 89************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 12.681 | 1 | 29 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.99E-9 | 1 | 30 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-12 | 2 | 36 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.7E-9 | 2 | 27 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.85E-10 | 2 | 38 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 4 | 27 | IPR017970 | Homeobox, conserved site |
Gene3D | G3DSA:1.20.5.170 | 9.5E-4 | 37 | 73 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 130 aa Download sequence Send to blast |
KSQLAQELGL PPRQVAIWYQ NKRARWKSQS LEVDYKALQQ RLDNAMSDNE RLKLEVERLK 60 EELNKAQEML LAFNTTTNNY SSISSSCDEV GSSCLQLHTQ SKHHLDKELY ACLIGDEGHF 120 GHNFFASSMS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 4e-96 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009800499.1 | 3e-93 | PREDICTED: homeobox-leucine zipper protein ATHB-52-like | ||||
Refseq | XP_016514208.1 | 2e-93 | PREDICTED: homeobox-leucine zipper protein ATHB-52-like, partial | ||||
TrEMBL | A0A1S4DLE0 | 4e-92 | A0A1S4DLE0_TOBAC; homeobox-leucine zipper protein ATHB-52-like | ||||
TrEMBL | A0A1U7YMN8 | 7e-92 | A0A1U7YMN8_NICSY; homeobox-leucine zipper protein ATHB-52-like | ||||
STRING | XP_009800499.1 | 1e-92 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2715 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.2 | 2e-16 | homeobox 7 |