PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016514142.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 480aa MW: 53654.8 Da PI: 8.1609

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016514142.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	43.7	5.5e-14	334	377	3	46
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPh 46 ++i+l++++ s++ +AA +Lgv+ +++KriCR yGI RWP XP_016514142.1 334 HNINLKKIEDRSSMTEDAAADDLGVGKSTVKRICRLYGITRWPP 377 799****************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	12.673	320	410	IPR003035	RWP-RK domain
Pfam	PF02042	1.8E-11	335	378	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence Send to blast
MLQVVDLKSP DSYCPLNLKV LDDRECALGG IYKAIEMVCQ KHQYLFAQIW VSVADSWCTG 60 KAITVRQRHI AISDNQNLSL FKYASGIQYI LEGYSVVGRA FSSKSSCFCR DVTQLSIMEY 120 PLVTCAREAG LTGCFAICLS SPGNDDNVYI LEFFLPPNEL LHRNLQDFLK LVLDTVKQQL 180 HFFKVAVGHD FEKKLPVEGI KISSDDELDS FNICQTTKEL HNVEPLPNGG KLMLLDTPNQ 240 QSLSSETNQQ LSLDINEINA ERDSIAVSEE QCNSAGSSTS AKTSQNKERK LQLELSTRLA 300 KQGANAVNKR KNGKRTLTSE SEIQKERERI ERDHNINLKK IEDRSSMTED AAADDLGVGK 360 STVKRICRLY GITRWPPKNK EKKRKCSPSR KMKSILPAEE DVNASTKFQQ SSDSPNKEDT 420 INGAKVGAHV TEIRDGTAVI TKVKYGDRXK EEFSFKKKKV AVRCTKLLLC AGSEEGPDHG

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence Send to blast

MLQVVDLKSP DSYCPLNLKV LDDRECALGG IYKAIEMVCQ KHQYLFAQIW VSVADSWCTG  60
KAITVRQRHI AISDNQNLSL FKYASGIQYI LEGYSVVGRA FSSKSSCFCR DVTQLSIMEY  120
PLVTCAREAG LTGCFAICLS SPGNDDNVYI LEFFLPPNEL LHRNLQDFLK LVLDTVKQQL  180
HFFKVAVGHD FEKKLPVEGI KISSDDELDS FNICQTTKEL HNVEPLPNGG KLMLLDTPNQ  240
QSLSSETNQQ LSLDINEINA ERDSIAVSEE QCNSAGSSTS AKTSQNKERK LQLELSTRLA  300
KQGANAVNKR KNGKRTLTSE SEIQKERERI ERDHNINLKK IEDRSSMTED AAADDLGVGK  360
STVKRICRLY GITRWPPKNK EKKRKCSPSR KMKSILPAEE DVNASTKFQQ SSDSPNKEDT  420
INGAKVGAHV TEIRDGTAVI TKVKYGDRXK EEFSFKKKKV AVRCTKLLLC AGSEEGPDHG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	376	384	PKNKEKKRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016514142.1	0.0	PREDICTED: protein NLP3-like, partial
TrEMBL	A0A1S4DL82	0.0	A0A1S4DL82_TOBAC; protein NLP3-like
STRING	XP_009601280.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13034	4	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	2e-30	Nin-like family protein