PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016514028.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 288aa MW: 30680.2 Da PI: 7.2971 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.5 | 1e-20 | 23 | 72 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrdp gk+ r++lg+f+taeeAaka++ a+++++g XP_016514028.1 23 HYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAAKAYDTAAREFRG 72 6********.**********8...557*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.57E-32 | 23 | 80 | No hit | No description |
Pfam | PF00847 | 8.5E-14 | 23 | 72 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-32 | 23 | 80 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.0E-41 | 23 | 86 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-22 | 23 | 81 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.157 | 23 | 80 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-11 | 24 | 35 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-11 | 46 | 62 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MKEKLNGSLK GGNVKTNGVK EVHYRGVRKR PWGRYAAEIR DPGKKSRVWL GTFDTAEEAA 60 KAYDTAAREF RGPKAKTNFP LPSENQCPSN SSGPTESSSG ETDVHAPDAP SEFDLTRPLG 120 TVVVGGDHGG RKSEVGLVRN GFPIFHHQPV MGALTSDSSS PVESSSGETV VHAPLELDLT 180 RRLNAVGEGG NPVRNGFPIF HPQPTVAVLP NGQSILLFDS TFVPTGVLNR PKPFGFEPVA 240 VEFNGVSGRV VHSDSSPSTA GNENYYGGGG VARRELNLDL NLAPPMEA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-21 | 23 | 81 | 2 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 1e-21 | 23 | 81 | 5 | 64 | ATERF1 |
3gcc_A | 1e-21 | 23 | 81 | 5 | 64 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00542 | DAP | Transfer from AT5G44210 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ617031 | 6e-32 | AJ617031.1 Nicotiana plumbaginifolia cDNA-AFLP fragment, clone Np193. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016514028.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor 4-like | ||||
Swissprot | Q9LW49 | 9e-78 | ERF4_NICSY; Ethylene-responsive transcription factor 4 | ||||
TrEMBL | A0A1S4DKW8 | 0.0 | A0A1S4DKW8_TOBAC; ethylene-responsive transcription factor 4-like | ||||
STRING | XP_009614490.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 1e-27 | erf domain protein 9 |