PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016513931.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 338aa    MW: 38823.6 Da    PI: 7.4612
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016513931.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.79.9e-1760105147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l ++v+q+G+ +W++Ia+++  gR++k+c++rw++ 
   XP_016513931.1  60 RGHWRPHEDAKLRELVAQFGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 105
                      899*****************************.***********996 PP
2Myb_DNA-binding544e-17112155146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++++eE+e+l+ a+k++G++ W+ Iar ++ gRt++ +k++w+ 
   XP_016513931.1 112 RRAFSEEEEERLLIAHKMYGNK-WSMIARLFP-GRTDNAVKNHWHV 155
                      678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.75755106IPR017930Myb domain
SMARTSM007174.5E-1459108IPR001005SANT/Myb domain
SuperFamilySSF466896.74E-2860153IPR009057Homeodomain-like
PfamPF002491.7E-1560105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-2661113IPR009057Homeodomain-like
CDDcd001674.83E-1263104No hitNo description
PROSITE profilePS5129427.018107161IPR017930Myb domain
SMARTSM007172.0E-13111159IPR001005SANT/Myb domain
PfamPF002491.1E-13112154IPR001005SANT/Myb domain
CDDcd001674.38E-10114154No hitNo description
Gene3DG3DSA:1.10.10.603.0E-20114160IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MNSTAASCAV EEMNFLLPSV KESHWIFNQM EEERGTYKLK DEKEEVDLVG MRKNTKLCAR  60
GHWRPHEDAK LRELVAQFGP QNWNLIAEKL EGRSGKSCRL RWFNQLDPRI NRRAFSEEEE  120
ERLLIAHKMY GNKWSMIARL FPGRTDNAVK NHWHVIMARK HREQNSVYRR RKPSHLQQIN  180
SPHIVSASNL NSDSTISSNY NNIDDHQSAS TCTDLSLTPS SKFIIPPFLM PRFTPMQHHH  240
QEILESNKGI SRHEELKMES GVHPNFLYGK EEPIANSTVE EGNQCGCGNQ SDTNSEISAS  300
ESVANNMTNV NIYENGNQEK QMKSKTMHFI DFLGVGAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-30571601104C-Myb DNA-Binding Domain
1msf_C1e-30571601104C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754491e-76HG975449.1 Solanum pennellii chromosome ch10, complete genome.
GenBankHG9755221e-76HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009782999.10.0PREDICTED: transcriptional activator Myb-like
RefseqXP_016513931.10.0PREDICTED: transcriptional activator Myb-like
TrEMBLA0A1S4DKL00.0A0A1S4DKL0_TOBAC; transcriptional activator Myb-like
TrEMBLA0A1U7X7W00.0A0A1U7X7W0_NICSY; transcriptional activator Myb-like
STRINGXP_009782999.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16842470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.12e-71myb domain protein 105