PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016513928.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 217aa    MW: 25039.4 Da    PI: 10.2174
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016513928.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.14e-2051136290
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     +Y+eYA ++GF +r+ +s+ks+r+g+i++r + C     ++++    + ++++r   r gC+a++ vk+ek g w+v k++ +HnH+l+
  XP_016513928.1  51 YYDEYAGRAGFITRVLSSRKSERDGSIISRGLGCRGIPDNQRSG---SIANQKRDRRRDGCTAMILVKREKPGMWVVRKFVRDHNHPLV 136
                     8*********************************7555555544...4588999999******************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.8E-1851136IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MMTMDVQISE DNGARRLESS EIGQVSTSEA DRTQEPYEGM PFESEETARA YYDEYAGRAG  60
FITRVLSSRK SERDGSIISR GLGCRGIPDN QRSGSIANQK RDRRRDGCTA MILVKREKPG  120
MWVVRKFVRD HNHPLVISPS KRRPTFDEKD KKIQELTAEL RIKKRLSAAY REQLLSLMKD  180
VDSHSEHMST KVQAVRRILK ELEAKRQELS NHSKHYK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755181e-158HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016513927.11e-160PREDICTED: protein FAR1-RELATED SEQUENCE 2-like
RefseqXP_016513928.11e-160PREDICTED: protein FAR1-RELATED SEQUENCE 2-like
RefseqXP_016513929.11e-160PREDICTED: protein FAR1-RELATED SEQUENCE 2-like
RefseqXP_016513930.11e-160PREDICTED: protein FAR1-RELATED SEQUENCE 2-like
TrEMBLA0A1S4DKL71e-159A0A1S4DKL7_TOBAC; protein FAR1-RELATED SEQUENCE 2-like
STRINGXP_009764129.11e-159(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.12e-56FAR1 family protein