PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016513811.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 673aa    MW: 76403.3 Da    PI: 5.7051
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016513811.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.11.2e-21125224197
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+kvlt sd+ ++  l++p k a ++      + +k+ + +l+++d+ g++W++k+ + ++++r++lt+GW+ Fv+ ++L +gD vvF   ++++
  XP_016513811.1 125 FCKVLTASDTKSNWGLSIPQKDAVKCfplldmSRDKPIQ-ELVVKDLPGKEWRFKHVFGGHPRRHLLTNGWSAFVNGKKLVAGDLVVFL--REEN 216
                     99****************************995555564.9************************************************..4467 PP

                     E..EEEEE CS
              B3  90 felvvkvf 97 
                     +  +v+++
  XP_016513811.1 217 GDVHVGFR 224
                     76788876 PP
2Auxin_resp29.24.1e-11250304157
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsser 57 
                     a++a++++ +F+v+ +P++  s+F+++++k+++a+++ + v m f m  e  +s+e 
  XP_016513811.1 250 ASDALASQRPFSVYCKPQT--SQFIISLNKYLEAINRGLGVSMTFTMPSEVANSHES 304
                     567899***********95..9***************************99988775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.3E-35118232IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.93E-28120224IPR015300DNA-binding pseudobarrel domain
CDDcd100174.90E-19123224No hitNo description
PfamPF023626.4E-19125223IPR003340B3 DNA binding domain
SMARTSM010192.6E-16125227IPR003340B3 DNA binding domain
PROSITE profilePS5086312.337125227IPR003340B3 DNA binding domain
PfamPF065078.2E-9250303IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MWPSHPKKQN HVTSRGDDDL YRELWKAFAG QFMDVPRVGE QVYYFPGLHI KQLEQSSNQE  60
LNQGTPISDP YLKILCRVVH VRFLVEHISE EVCAEINLLP KHDQTEPVNP DFYHSEIPRP  120
QIHSFCKVLT ASDTKSNWGL SIPQKDAVKC FPLLDMSRDK PIQELVVKDL PGKEWRFKHV  180
FGGHPRRHLL TNGWSAFVNG KKLVAGDLVV FLREENGDVH VGFRHLLCEK SSVEAPIASS  240
LDIKGVLAAA SDALASQRPF SVYCKPQTSQ FIISLNKYLE AINRGLGVSM TFTMPSEVAN  300
SHESFTCMTN EKDQMQINQF SQNTNVFLNE DEEHMEDAEA IVYSPPQHSM TPSGIGEKRH  360
SDHTIYISPL EGNVESTCGT RKHNEVSNPA EIESIRGTEE PKAITSSSWD FNPIQGLELE  420
DTEIIKDILP IVSQNLPLDY TVSSNTDNDH FLPIMQDSEE WQNFQGTDFP LHGQSPSENH  480
NMQNFFNKDQ QNSSKAMHPT SISSQIPYDG PGHADEKVHW EGYHVARRYI PILNRIISQY  540
PSTLSSFKAT SPIFQSMCLE ILAELVYLLG QFTTGNMDIK YHSEAKRYLR DLKLSGIEIG  600
WLEKRLAKVE DIFSMKRISI RRQELILGIE DTTATLRLMN EELGSLEKDL QKLSSNINLK  660
NPAEDHPILE GLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A5e-801829417296Auxin response factor 1
4ldw_A5e-801829417296Auxin response factor 1
4ldw_B5e-801829417296Auxin response factor 1
4ldx_A6e-801829417296Auxin response factor 1
4ldx_B6e-801829417296Auxin response factor 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009773406.10.0PREDICTED: uncharacterized protein LOC104223639 isoform X1
RefseqXP_016513811.10.0PREDICTED: uncharacterized protein LOC107830695 isoform X1
TrEMBLA0A1S4DK910.0A0A1S4DK91_TOBAC; Auxin response factor
TrEMBLA0A1U7W8760.0A0A1U7W876_NICSY; Auxin response factor
STRINGXP_009773406.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1534468
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.17e-88auxin response factor 11