PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016513445.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 460aa MW: 50454.9 Da PI: 6.5093

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016513445.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	116.4	1.1e-36	106	163	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +k+l+cprC+s++tkfCyynny+++qPr+fCk C+ryWt+GG++rnvPvG+grrknk+s XP_016513445.1 106 DKMLPCPRCNSMETKFCYYNNYNVNQPRHFCK-CQRYWTAGGTMRNVPVGSGRRKNKSS 163 7899*************************9.*********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-28	102	161	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.2E-29	107	162	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	26.31	109	162	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence Send to blast
MSEVKLFGKT IHLPLDDLLD QRNSSAATTS HDDLITSEAE LTQIKNRDDF TNSTADEAVE 60 PETSSGISDD PKKEDADKET SSPKATKKED PSEANVTQEK ALKKLDKMLP CPRCNSMETK 120 FCYYNNYNVN QPRHFCKCQR YWTAGGTMRN VPVGSGRRKN KSSPTTGYRH IMVTDALQAA 180 RFEAAHGMNL PMLRTNGTVL AFGSDKPLCD PMASILNLAE KSQNSVQNGF NGSEQRTPSA 240 CGGKETGNNI SSGACSTASN SAHDLAWKNF QAFPPQVHQF PGHPWPYSYN AAPWTSAVPQ 300 PNLAPPRFPV PFYPAPPYWG CTVASPWNVP WVSPPSSSPD CSVLSATPTS PTLGKHSRDE 360 RTLNPSNSEK EEPLQDIDGE RSVLIPKTLR VDDPYEAAKS SIWSTLGIQN EKNDSTNGAR 420 LFKAFNSKVD DQRNHESDAS LVLQANPAAL SRSLNFQEST

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence Send to blast

MSEVKLFGKT IHLPLDDLLD QRNSSAATTS HDDLITSEAE LTQIKNRDDF TNSTADEAVE  60
PETSSGISDD PKKEDADKET SSPKATKKED PSEANVTQEK ALKKLDKMLP CPRCNSMETK  120
FCYYNNYNVN QPRHFCKCQR YWTAGGTMRN VPVGSGRRKN KSSPTTGYRH IMVTDALQAA  180
RFEAAHGMNL PMLRTNGTVL AFGSDKPLCD PMASILNLAE KSQNSVQNGF NGSEQRTPSA  240
CGGKETGNNI SSGACSTASN SAHDLAWKNF QAFPPQVHQF PGHPWPYSYN AAPWTSAVPQ  300
PNLAPPRFPV PFYPAPPYWG CTVASPWNVP WVSPPSSSPD CSVLSATPTS PTLGKHSRDE  360
RTLNPSNSEK EEPLQDIDGE RSVLIPKTLR VDDPYEAAKS SIWSTLGIQN EKNDSTNGAR  420
LFKAFNSKVD DQRNHESDAS LVLQANPAAL SRSLNFQEST

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016513445.1	0.0	PREDICTED: cyclic dof factor 1-like
TrEMBL	A0A1S4DJ71	0.0	A0A1S4DJ71_TOBAC; cyclic dof factor 1-like
STRING	XP_009788566.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-79	cycling DOF factor 2