PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016513428.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 507aa MW: 55109.4 Da PI: 5.0421

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016513428.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.6	5.3e-09	327	375	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_016513428.1 327 NSHSLAERIRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 375 58***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.50E-11	322	379	No hit	No description
SuperFamily	SSF47459	4.45E-17	322	393	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.434	324	374	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-16	325	391	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-6	327	375	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.3E-10	330	380	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence Send to blast
MDIASNNDSE PEKRNNEEVM NYQSPNVSSE WQLSGSNLTN VSMGMIQSNN QMVDSFCPTS 60 WDQPTNSPSL GFCDANVQIN PSTSNPLVTL GSNWTPNAML KGGMFLPPAP MMLPQSLAQF 120 LADSGFIERA ARFSCFSGGN FGDMMNPFSL PESMNPYYRG PPPMQGPQEV LASNGLKSPS 180 AQKQHLSNVA ESSKDVSLTV DHRGTERSPL KNEKKSENFD EVAAVSGNES GEAECSGRQE 240 EMDGAGEESY GKNIGSKKRK RGGKDTEPQQ PLAESGKDQI EIQKGEQNLN SVTGKSGGKN 300 VKQGSQASDP TKEDYIHVRA RRGQATNSHS LAERIRREKI SERMKFLQDL VPGCNKVTGK 360 AVMLDEIINY VQSLQRQVEF LSMKLATVNP QLDFNIDGLL AKNILQSRAG PSSSFAFPPD 420 MTMQYPPLHP PQPGYGIPSD AFRRAITPHL AATSGGPSEY KDPSSEGPSV WDNELHNIVQ 480 MGLNSSIPLS SEDLSGSLPA CQMKAEP

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence Send to blast

MDIASNNDSE PEKRNNEEVM NYQSPNVSSE WQLSGSNLTN VSMGMIQSNN QMVDSFCPTS  60
WDQPTNSPSL GFCDANVQIN PSTSNPLVTL GSNWTPNAML KGGMFLPPAP MMLPQSLAQF  120
LADSGFIERA ARFSCFSGGN FGDMMNPFSL PESMNPYYRG PPPMQGPQEV LASNGLKSPS  180
AQKQHLSNVA ESSKDVSLTV DHRGTERSPL KNEKKSENFD EVAAVSGNES GEAECSGRQE  240
EMDGAGEESY GKNIGSKKRK RGGKDTEPQQ PLAESGKDQI EIQKGEQNLN SVTGKSGGKN  300
VKQGSQASDP TKEDYIHVRA RRGQATNSHS LAERIRREKI SERMKFLQDL VPGCNKVTGK  360
AVMLDEIINY VQSLQRQVEF LSMKLATVNP QLDFNIDGLL AKNILQSRAG PSSSFAFPPD  420
MTMQYPPLHP PQPGYGIPSD AFRRAITPHL AATSGGPSEY KDPSSEGPSV WDNELHNIVQ  480
MGLNSSIPLS SEDLSGSLPA CQMKAEP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016513426.1	0.0	PREDICTED: transcription factor bHLH49-like
Refseq	XP_016513427.1	0.0	PREDICTED: transcription factor bHLH49-like
Refseq	XP_016513428.1	0.0	PREDICTED: transcription factor bHLH49-like
TrEMBL	A0A1S4DJ70	0.0	A0A1S4DJ70_TOBAC; transcription factor bHLH49-like
STRING	XP_009593502.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	1e-109	bHLH family protein