PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016513155.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NF-YC

Protein Properties

Length: 434aa MW: 49374.3 Da PI: 9.5921

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016513155.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	27	9.8e-09	336	418	17	99
NF-YC 17 knhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrt.lkksdiaaavtrtdifdflvdivprd 99 + ++P ri++i+k ++ ++s ea ++ ka e f le+ r + +r+ + ++++v++ + fdfl d vp++ XP_016513155.1 336 ALYQFPHNRIHRIIKDENSDMRMSQEATFVVNKATEKF-LEVFCREAYACSFLDRNNyVGYDHLSSVVSKRHRFDFLSDFVPQK 418 4579*********99988889**********9.68888877777766666516677799**************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	5.9E-15	320	417	IPR009072	Histone-fold
Pfam	PF00808	1.1E-9	339	402	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	4.1E-18	340	417	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence Send to blast
MPKAKRSNGK SDKNDGDEPE IFVVPSSSTE SQQDEKEEEE NDGVENVHEE YVRDTDDEEK 60 EEENAAEGKV GNNTNRRGRN EELEVQKKVY RRKGKKGDEN REIEAKTAKQ SESENLKIYM 120 RKKKVKNGKE EEEEEQNVAK TAKREKDNAE KKMKEKNEKG RISKNAKSNG DSTRGGKIEN 180 KKKKNEEEGG QKVAKKAKSN GDSSRGSENE KEESKKKKKR AEEGEGGGKA AKKAKSNGDS 240 SRSKKEEKKM KRTENKKEGD EEAEEKGVKR ANSNGSTSRA TKEKMKREKE ENKGKTSNGK 300 VENGARSNGD TPLKKLKAKK KREDDEEEED EKSGSALYQF PHNRIHRIIK DENSDMRMSQ 360 EATFVVNKAT EKFLEVFCRE AYACSFLDRN NYVGYDHLSS VVSKRHRFDF LSDFVPQKVR 420 AVDALAEIPK AEET

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence Send to blast

MPKAKRSNGK SDKNDGDEPE IFVVPSSSTE SQQDEKEEEE NDGVENVHEE YVRDTDDEEK  60
EEENAAEGKV GNNTNRRGRN EELEVQKKVY RRKGKKGDEN REIEAKTAKQ SESENLKIYM  120
RKKKVKNGKE EEEEEQNVAK TAKREKDNAE KKMKEKNEKG RISKNAKSNG DSTRGGKIEN  180
KKKKNEEEGG QKVAKKAKSN GDSSRGSENE KEESKKKKKR AEEGEGGGKA AKKAKSNGDS  240
SRSKKEEKKM KRTENKKEGD EEAEEKGVKR ANSNGSTSRA TKEKMKREKE ENKGKTSNGK  300
VENGARSNGD TPLKKLKAKK KREDDEEEED EKSGSALYQF PHNRIHRIIK DENSDMRMSQ  360
EATFVVNKAT EKFLEVFCRE AYACSFLDRN NYVGYDHLSS VVSKRHRFDF LSDFVPQKVR  420
AVDALAEIPK AEET

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009800538.1	0.0	PREDICTED: DNA ligase 1-like
Refseq	XP_016513155.1	0.0	PREDICTED: DNA ligase 1-like isoform X1
TrEMBL	A0A1S4DIC9	0.0	A0A1S4DIC9_TOBAC; DNA ligase 1-like isoform X1
TrEMBL	A0A1U7YBN9	0.0	A0A1U7YBN9_NICSY; DNA ligase 1-like
STRING	XP_009800538.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9304	14	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07980.1	4e-25	nuclear factor Y, subunit C10