PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016513093.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 417aa MW: 47104 Da PI: 9.4919 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.7 | 4.8e-06 | 54 | 76 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H XP_016513093.1 54 YVCEICNQGFQRDQNLQMHRRRH 76 9*********************9 PP | |||||||
2 | zf-C2H2 | 15.5 | 4.8e-05 | 131 | 153 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k + +s++k H++t+ XP_016513093.1 131 WVCDKCSKGYAVQSDYKAHLKTC 153 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.39E-5 | 53 | 76 | No hit | No description |
PROSITE profile | PS50157 | 10.97 | 54 | 76 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.5E-5 | 54 | 76 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0052 | 54 | 76 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS01359 | 0 | 56 | 136 | IPR019786 | Zinc finger, PHD-type, conserved site |
PROSITE pattern | PS00028 | 0 | 56 | 76 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 190 | 95 | 125 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 6.3E-4 | 122 | 152 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.39E-5 | 126 | 151 | No hit | No description |
SMART | SM00355 | 65 | 131 | 158 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence Send to blast |
MLSINNPNSS SDPFTSSENG NNCNRRKRRP AGTPDPDAEV VSLSPKTLLE SDQYVCEICN 60 QGFQRDQNLQ MHRRRHKVPW KLLKRETPIV RKRVFVCPEP TCLHHDPCHA LGDLVGIKKH 120 FRRKHSNHKQ WVCDKCSKGY AVQSDYKAHL KTCGTRGHSC DCGRVFSRVE SFIEHQDACS 180 FSRLRSDSKS LQPTPCLSRT ASSPTPSSDT NLTTVPWPSF LISNKPKTFL KNDVKQHNLE 240 LQLLTTTTTT TSLSSPFDIS VSSKPNDGHS THLQLSIGSS DFNEKNDSEN DTHKSRNGPN 300 LDVSLTLKDE ARERLSQAMA EKAYAEEARK QAKRQIELAE QEFANAKRIR RQAQGELEKA 360 QALKEQAIRQ INSTLSQITC HVCKQQFQAK RIATTSIVPS YDMRLSHISS GLTEHKM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-17 | 127 | 179 | 3 | 55 | Zinc finger protein JACKDAW |
5b3h_F | 3e-17 | 127 | 179 | 3 | 55 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975518 | 1e-130 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009765149.1 | 0.0 | PREDICTED: protein SHOOT GRAVITROPISM 5-like | ||||
Refseq | XP_016513093.1 | 0.0 | PREDICTED: protein SHOOT GRAVITROPISM 5-like | ||||
Swissprot | F4IPE3 | 1e-143 | IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5 | ||||
TrEMBL | A0A1S4DI75 | 0.0 | A0A1S4DI75_TOBAC; protein SHOOT GRAVITROPISM 5-like | ||||
TrEMBL | A0A1U7VRY7 | 0.0 | A0A1U7VRY7_NICSY; protein SHOOT GRAVITROPISM 5-like | ||||
STRING | XP_009765149.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1022 | 24 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01940.1 | 1e-144 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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