PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016513014.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 338aa    MW: 38359.9 Da    PI: 9.9368
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016513014.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.73.2e-16125214198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f k ++ps+v    +l lpk+f++ +   +  ++t++l de+g++++  +  ++++    l++GW++F  +++L  gD ++F+l++  +  l v 
  XP_016513014.1 125 FAKCMLPSNVAHGFWLHLPKSFCNMYL--PSHDTTVILVDEWGNEYKTSYLLERNG----LSAGWRGFSMSHRLLKGDLLIFRLIEPCK--LQVY 211
                     889********************8884..346679***************888888....***********************997443..5787 PP

                     EE- CS
              B3  96 vfr 98 
                     ++r
  XP_016513014.1 212 IIR 214
                     776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.5E-19117216IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.73E-22119216IPR015300DNA-binding pseudobarrel domain
CDDcd100178.06E-22123214No hitNo description
PfamPF023623.5E-13125214IPR003340B3 DNA binding domain
PROSITE profilePS5086311.998125216IPR003340B3 DNA binding domain
SMARTSM010193.9E-18125216IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MEDRNLISVK PVTKICKEGQ QKVGPRKLKL TSYSSASTST QTHPSPKIKR VQLDRKNMVP  60
KKPRSVKSKA KQVKSNHPRK AESKLKGTNK RTRINDLYDD VEAKFSVMER AERVLSSLAD  120
EFPSFAKCML PSNVAHGFWL HLPKSFCNMY LPSHDTTVIL VDEWGNEYKT SYLLERNGLS  180
AGWRGFSMSH RLLKGDLLIF RLIEPCKLQV YIIRVNGRDV VDAALCLMNF DALKKSTDLD  240
LAQNDNRKRK KAKRLVEPFY VDFSKPKEYI QNDSHSAVDL NVSPSGHRSE TNSEVLDSEV  300
PEGFIAGSDV INRLQSNEIS CSETSFLHDN PQNSISCR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1246250RKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-79HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9755131e-79HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016513014.10.0PREDICTED: B3 domain-containing protein At5g42700-like isoform X2
TrEMBLA0A1S4DIA70.0A0A1S4DIA7_TOBAC; B3 domain-containing protein At5g42700-like isoform X2
STRINGXP_009772548.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.14e-36B3 family protein