PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016512926.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 350aa    MW: 40170.3 Da    PI: 7.3428
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016512926.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.69.2e-13170215454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h ++Er+RR+++ ++f +L  +lP +     kK++Ka+iLe+A++++k+L
  XP_016512926.1 170 DHIIAERKRREKLSQRFVTLSAILPGL-----KKVDKASILEQAIRHVKEL 215
                     6999***********************.....9****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.926166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-15170230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-10170215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-16170232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.52E-11171220No hitNo description
SMARTSM003536.6E-13172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MDNSSLRWFS RMGEAGAYYS NEKKSFDDFT TQKSTISEDQ ETRELSLSPD SHAYSRSNYF  60
NQEIKSKVSK IDFSLITPLE NCPIGSKRPA ANQLKMNTNM LSFTKNNNTD SVPNHQSCKI  120
EAVDEIYLCD SDHKYFQFLK SKSGYDLNDS QATKLGQGQK RERLPSVDQD HIIAERKRRE  180
KLSQRFVTLS AILPGLKKVD KASILEQAIR HVKELKEKVQ QLEEEEKTRS QESVMFVNKS  240
QLEEDDHSSS SSDENNHCSS GDADIEVRFS DHKNVLIRIT CERRNAFVLN IHNEIEKLHL  300
SIVQSCMMPF GKKAIDVTIV AQMEDSFCMS LKDLVKHVRM VTARLMTKHN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174179ERKRRE
2175180RKRREK
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016512926.10.0PREDICTED: transcription factor bHLH18-like
SwissprotQ9T0728e-47BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A1S4DHT30.0A0A1S4DHT3_TOBAC; transcription factor bHLH18-like
STRINGXP_009630109.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA136021316
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.16e-36bHLH family protein