PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016512598.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 283aa    MW: 31997.7 Da    PI: 8.5722
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016512598.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.8e-18108157255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+WvAeIr p++   r+r +lg+f++aeeAa a++  + +l+g
  XP_016512598.1 108 RYRGVRQRH-WGKWVAEIRLPRK---RTRLWLGTFDSAEEAAFAYDVEAFRLRG 157
                     8*******9.**********954...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.34E-35107167No hitNo description
SuperFamilySSF541711.96E-22108166IPR016177DNA-binding domain
PfamPF008472.5E-11108157IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-31108166IPR001471AP2/ERF domain
SMARTSM003803.8E-39108171IPR001471AP2/ERF domain
PROSITE profilePS5103223.538108165IPR001471AP2/ERF domain
PRINTSPR003671.7E-10109120IPR001471AP2/ERF domain
PRINTSPR003671.7E-10131147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MEYVESISNI QSTMSIDRPL KKLKIPSSEH KDLRAATYDP KQSTYTAHNS RFSFPFALDD  60
QLPMQSPVQN QTMISFAPQN CSLYPCHLAL VQCRNTYNYG TVSTTPKRYR GVRQRHWGKW  120
VAEIRLPRKR TRLWLGTFDS AEEAAFAYDV EAFRLRGSNA RLNFPHLFLS DPSVNNIVET  180
NSAAASSTSL SNNSYQVQHK NKRYIKQCQK EDMTPSDGGQ STSVLDSNIL QVNSDYQAST  240
DAMQLKERLF DSISDKGWID ILQSGSSIGS PFGNNISTDD NLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21107165160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016512598.10.0PREDICTED: ethylene-responsive transcription factor SHINE 3-like
TrEMBLA0A1S4DGV00.0A0A1S4DGV0_TOBAC; ethylene-responsive transcription factor SHINE 3-like
STRINGXP_009762241.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G36060.11e-33ERF family protein