PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016512583.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 270aa    MW: 30726.8 Da    PI: 6.2618
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016512583.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.5e-1892141255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr ++ +g+Wv+eIr+p++   + r++lg++ ta++Aa+a++ a+++++g
  XP_016512583.1  92 TYRGVRKRS-WGKWVSEIREPRK---KSRIWLGTYPTAQMAARAHDVAALAIKG 141
                     69****888.**********843...6**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.31492149IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-2192150IPR016177DNA-binding domain
PfamPF008471.4E-1292141IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-3192150IPR001471AP2/ERF domain
SMARTSM003802.0E-3592155IPR001471AP2/ERF domain
PRINTSPR003673.5E-1093104IPR001471AP2/ERF domain
CDDcd000184.24E-3193151No hitNo description
PRINTSPR003673.5E-10115131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MENQEQIINL EIRANYRRHN FFSNSSSNVL NSPSNTTSSS SSSSSSSSSN ELTRKNYDSK  60
KSSRKVQELI QINENGEEKK KWKKNEDEKH PTYRGVRKRS WGKWVSEIRE PRKKSRIWLG  120
TYPTAQMAAR AHDVAALAIK GDSAYLNFPH LAHQLPRPAS ASPKDIQTAA AFAAAITFPD  180
ENEEIRAEPS RVELRSCHSS TNLLSENTQE LPNSFSREDD DTFFDLPDLS IDVADQNDRY  240
CCTMSTWQQL VGDDTTVFRL EEPFLWDCPG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-18901501273Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009613128.10.0PREDICTED: ethylene-responsive transcription factor ERF039-like
RefseqXP_016512583.10.0PREDICTED: ethylene-responsive transcription factor ERF039-like
SwissprotQ8LBQ71e-59ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A1S4DGT70.0A0A1S4DGT7_TOBAC; ethylene-responsive transcription factor ERF039-like
STRINGXP_009613128.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.11e-55ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]