PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016511999.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 333aa    MW: 37547.3 Da    PI: 4.4986
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016511999.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.47.2e-10167210654
                     HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      ++ErrRR+r+N++++ Lr+++Pk +      K++  +i+  +++Y k+L
  XP_016511999.1 167 LMAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSIVGDTIDYTKEL 210
                     589*********************66......9*************8876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.602161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-14164230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-7167210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-10167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-13168222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEYYSDNGFL LDELLALRSD SWETYSLPME INDLYNNGWN YECFGENPVA IPLSCTTPTS  60
TTTTTSSFEE YSNFPFDQSL SNSLVSEFCS TQLGDELSPL ELTNSSNNWL DTPFTSHLQD  120
LEVGNFGCKL ERTESAVTAP TFNIIGGLCP EKKVNKKKLN GQPSKNLMAE RRRRKRLNDR  180
LSMLRSVVPK ISKMDRTSIV GDTIDYTKEL LEKINNLQEE MELGPNQLSL TSIFKNEKPI  240
EIFIRNSPKF DVERRNIDTR VEITCAGKSD LLLSTLTTLD ALGLETQQCV ISCFSDFAMQ  300
ASCSQEMEQR GLTNAEDIKQ ALFRNAGYAG KCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155175KKKLNGQPSKNLMAERRRRKR
2169176ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755243e-34HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016511999.10.0PREDICTED: transcription factor bHLH93-like
SwissprotQ9LSL19e-72BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A1S4DFJ80.0A0A1S4DFJ8_TOBAC; transcription factor bHLH93-like
STRINGXP_009619169.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7892497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.12e-64beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]