PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016511983.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 359aa    MW: 40492.4 Da    PI: 7.1178
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016511983.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.11.1e-19653148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lvd++++ G g+W++ ++  g++R++k+c++rw +yl
   XP_016511983.1  6 KGPWTPEEDQKLVDYIHKNGHGNWSALPKLAGLNRCGKSCRLRWTNYL 53
                     79********************************************97 PP

2Myb_DNA-binding56.94.9e-1859104148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++++E++l+v+++ +lG++ W++Ia +++ gRt++++k++w+++l
   XP_016511983.1  59 RGKFSEDEEKLIVKLHSLLGNK-WSAIATRLP-GRTDNEIKNYWNTHL 104
                      89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.062157IPR017930Myb domain
SuperFamilySSF466892.27E-313100IPR009057Homeodomain-like
SMARTSM007175.4E-16555IPR001005SANT/Myb domain
PfamPF002494.1E-18653IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-25760IPR009057Homeodomain-like
CDDcd001671.15E-12853No hitNo description
PROSITE profilePS5129422.70658108IPR017930Myb domain
SMARTSM007176.1E-1758106IPR001005SANT/Myb domain
PfamPF002496.1E-1759104IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2661108IPR009057Homeodomain-like
CDDcd001671.13E-1261104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MSGLKKGPWT PEEDQKLVDY IHKNGHGNWS ALPKLAGLNR CGKSCRLRWT NYLRPDIKRG  60
KFSEDEEKLI VKLHSLLGNK WSAIATRLPG RTDNEIKNYW NTHLRKKLLQ MGIDPVTHRP  120
RTDHINLFNA LIGNLPPQLL AAITSNYINI NNIDMNILTN FLFSDTAQLI HQIQLLQNSS  180
LLVNSLIRNA TATTSPLNIE ALSQILGSQN QIQEYNSTLM NNQQFLSNSS SDSLTDFGLN  240
SSNVHAEFTH ANNFSGKLDY QEINDTKLGG DQLMRLSGTC STSSSVTGSE NQMKNISKMH  300
NENNTSDIYP KQELIMQPSS ASTSTFEPWG QIMGDEEAND SYWRDIIDQA SRLHDRYSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-30410825128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016511983.10.0PREDICTED: myb-related protein 315-like
TrEMBLA0A1S4DF670.0A0A1S4DF67_TOBAC; myb-related protein 315-like
STRINGXP_009776410.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.23e-79myb domain protein 9