PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016511983.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 359aa MW: 40492.4 Da PI: 7.1178 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 62.1 | 1.1e-19 | 6 | 53 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lvd++++ G g+W++ ++ g++R++k+c++rw +yl XP_016511983.1 6 KGPWTPEEDQKLVDYIHKNGHGNWSALPKLAGLNRCGKSCRLRWTNYL 53 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 56.9 | 4.9e-18 | 59 | 104 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++++E++l+v+++ +lG++ W++Ia +++ gRt++++k++w+++l XP_016511983.1 59 RGKFSEDEEKLIVKLHSLLGNK-WSAIATRLP-GRTDNEIKNYWNTHL 104 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 28.062 | 1 | 57 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.27E-31 | 3 | 100 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.4E-16 | 5 | 55 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-18 | 6 | 53 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-25 | 7 | 60 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.15E-12 | 8 | 53 | No hit | No description |
PROSITE profile | PS51294 | 22.706 | 58 | 108 | IPR017930 | Myb domain |
SMART | SM00717 | 6.1E-17 | 58 | 106 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.1E-17 | 59 | 104 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-26 | 61 | 108 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.13E-12 | 61 | 104 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 359 aa Download sequence Send to blast |
MSGLKKGPWT PEEDQKLVDY IHKNGHGNWS ALPKLAGLNR CGKSCRLRWT NYLRPDIKRG 60 KFSEDEEKLI VKLHSLLGNK WSAIATRLPG RTDNEIKNYW NTHLRKKLLQ MGIDPVTHRP 120 RTDHINLFNA LIGNLPPQLL AAITSNYINI NNIDMNILTN FLFSDTAQLI HQIQLLQNSS 180 LLVNSLIRNA TATTSPLNIE ALSQILGSQN QIQEYNSTLM NNQQFLSNSS SDSLTDFGLN 240 SSNVHAEFTH ANNFSGKLDY QEINDTKLGG DQLMRLSGTC STSSSVTGSE NQMKNISKMH 300 NENNTSDIYP KQELIMQPSS ASTSTFEPWG QIMGDEEAND SYWRDIIDQA SRLHDRYSP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-30 | 4 | 108 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016511983.1 | 0.0 | PREDICTED: myb-related protein 315-like | ||||
TrEMBL | A0A1S4DF67 | 0.0 | A0A1S4DF67_TOBAC; myb-related protein 315-like | ||||
STRING | XP_009776410.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G16770.2 | 3e-79 | myb domain protein 9 |