PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016511523.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 473aa MW: 52580.4 Da PI: 7.0601 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 113.5 | 2.2e-35 | 48 | 193 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.......... 77 lp+G++F+Ptd+el+ e+L++kv +k+ ++++ i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+ XP_016511523.1 48 LPAGVKFDPTDQELI-EHLEAKVLAKEskshplIDEFIPtIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKiqtecqdlqa 140 799************.99****999996665443333333666646**********.555666799******************86777777765 PP NAM 78 .tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l XP_016511523.1 141 aGGETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 193 433778************.999***********5547999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.09E-38 | 44 | 212 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 33.748 | 48 | 212 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.1E-16 | 49 | 193 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 473 aa Download sequence Send to blast |
MSKSSHQLGS ISSSDLIDAK LEEHQLCGSK QCPGCGHKLE GKPDWVGLPA GVKFDPTDQE 60 LIEHLEAKVL AKESKSHPLI DEFIPTIEGE DGICYTHPEK LPGVTRDGLS RHFFHRPSKA 120 YTTGTRKRRK IQTECQDLQA AGGETRWHKT GKTRPVMVNG KQKGCKKILV LYTNFGKNRK 180 PEKTNWVMHQ YHLGQHEEEK EGELVVSKIF YQTQPRQCNW SNTTTSTTAG GEASSDLNSR 240 RDSGSGSCSS SKDINNNIPS SHRDELSAAV CAAMSSYTTM DIQQFKPEHF SFLPFSKSFD 300 EAGVVVGEAS IAREGGSAAA AAAPVGTSDA RDIHKPHHVT HDQQLHQHQH QHQHHHQVAT 360 ASFHISRPSP PISAIITPPP LHNTSIILGH DDAFHVPRSI ILPNENFQQQ QQQQQQQHHK 420 LEGRSASELE QLIMGCTSTD IKGDQSSITN PQDADWLKYS HFWPDPDNPD HHT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-12 | 46 | 193 | 13 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 0.0 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009790203.1 | 0.0 | PREDICTED: NAC domain-containing protein 4-like isoform X1 | ||||
Refseq | XP_009790204.1 | 0.0 | PREDICTED: NAC domain-containing protein 4-like isoform X1 | ||||
Refseq | XP_009790205.1 | 0.0 | PREDICTED: NAC domain-containing protein 4-like isoform X1 | ||||
Refseq | XP_009790206.1 | 0.0 | PREDICTED: NAC domain-containing protein 4-like isoform X1 | ||||
Refseq | XP_016511523.1 | 0.0 | PREDICTED: NAC domain-containing protein 55-like | ||||
Refseq | XP_016511581.1 | 0.0 | PREDICTED: NAC domain-containing protein 55-like | ||||
Refseq | XP_016511644.1 | 0.0 | PREDICTED: NAC domain-containing protein 55-like | ||||
Swissprot | Q9M0F8 | 0.0 | NAC75_ARATH; NAC domain-containing protein 75 | ||||
TrEMBL | A0A1S4DDU0 | 0.0 | A0A1S4DDU0_TOBAC; NAC domain-containing protein 55-like | ||||
TrEMBL | A0A1U7XH48 | 0.0 | A0A1U7XH48_NICSY; NAC domain-containing protein 4-like isoform X1 | ||||
STRING | XP_009790203.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4057 | 24 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29230.1 | 1e-165 | NAC domain containing protein 75 |
Publications ? help Back to Top | |||
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