PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016511488.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 176aa MW: 20009.8 Da PI: 10.06 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.1 | 5e-19 | 49 | 100 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y GVr ++ +g+++AeIrd + ng r++lg+f+t eeAa a+++a+ +++g+ XP_016511488.1 49 HYIGVRKRP-WGKYAAEIRDSTRNG--IRVWLGTFDTVEEAALAYDQAAFSMRGA 100 799******.**********44465..*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.23E-27 | 48 | 107 | No hit | No description |
SMART | SM00380 | 1.9E-33 | 49 | 113 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.338 | 49 | 107 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.22E-22 | 49 | 109 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.4E-14 | 49 | 99 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.1E-29 | 49 | 108 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-9 | 50 | 61 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-9 | 73 | 89 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MFDQIPRSSS SSETNSSKGS SADEEVTSYS IKRKDANTDK EELKDEEKHY IGVRKRPWGK 60 YAAEIRDSTR NGIRVWLGTF DTVEEAALAY DQAAFSMRGA LAFLNFPMEK VQESLQKIKM 120 NSSQLLDGLS PAAALKETHK MRMKNVKRRR NRKKKKKGVL VFEDLGADLL EELLMS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-29 | 48 | 108 | 4 | 64 | ATERF1 |
3gcc_A | 6e-29 | 48 | 108 | 4 | 64 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 146 | 156 | KRRRNRKKKKK |
2 | 148 | 156 | RRNRKKKKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016511488.1 | 1e-127 | PREDICTED: ethylene-responsive transcription factor 1B-like | ||||
Swissprot | A0A3Q7I5Y9 | 4e-53 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | A0A1S4DDS9 | 1e-126 | A0A1S4DDS9_TOBAC; ethylene-responsive transcription factor 1B-like | ||||
STRING | XP_009619700.1 | 3e-97 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31230.1 | 1e-43 | ethylene-responsive element binding factor 15 |
Publications ? help Back to Top | |||
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