PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016511420.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | G2-like | ||||||||
Protein Properties | Length: 234aa MW: 26723.7 Da PI: 10.6508 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 92.6 | 3.4e-29 | 184 | 234 | 2 | 52 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 pr+rWt++LH+rF++ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+ XP_016511420.1 184 PRMRWTSTLHARFIHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQM 234 9*************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.15E-13 | 181 | 234 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.4E-25 | 182 | 234 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.6E-21 | 184 | 234 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.9E-6 | 185 | 234 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MELFPAQPDL SLQISPPNNK PSSSSSWKRS TSNSTNENQE MDLGFWKRAL ESRNSSNNNN 60 NNNNSSCFEL SLSSNINPRP NSSQYFHHLQ NTNTNIIHSL HQNQVLNPIR GVPVYNQNPF 120 FPYDNANTTT TLPIPSSVSS FNYNHTISSS NSHSHFQSRH YHQNGLIRSR FMSRFPAKRS 180 MRAPRMRWTS TLHARFIHAV ELLGGHERAT PKSVLELMDV KDLTLAHVKS HLQM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 6e-15 | 185 | 233 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 6e-15 | 185 | 233 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 6e-15 | 185 | 233 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 6e-15 | 185 | 233 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 6e-15 | 185 | 233 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 6e-15 | 185 | 233 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 6e-15 | 185 | 233 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 6e-15 | 185 | 233 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FQ382790 | 5e-41 | FQ382790.1 Vitis vinifera clone SS0ABG43YJ15. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009625992.1 | 1e-170 | PREDICTED: probable transcription factor KAN2 isoform X4 | ||||
Refseq | XP_016511420.1 | 1e-170 | PREDICTED: probable transcription factor KAN2 | ||||
Swissprot | Q9C616 | 1e-59 | KAN2_ARATH; Probable transcription factor KAN2 | ||||
TrEMBL | A0A1S4DD99 | 1e-169 | A0A1S4DD99_TOBAC; probable transcription factor KAN2 | ||||
STRING | XP_009625989.1 | 1e-169 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2738 | 22 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32240.1 | 2e-40 | G2-like family protein |
Publications ? help Back to Top | |||
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