PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016511320.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 282aa    MW: 32969.8 Da    PI: 8.4644
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016511320.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.32e-193481148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd  l+++++++G g+W++ ar+ g++Rt+k+c++rw++yl
   XP_016511320.1 34 RGPWTAEEDFTLINYIAKHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 81
                     89********************************************97 PP

2Myb_DNA-binding49.11.3e-1587130146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T eE++ +++++ ++G++ W++Ia++++ gRt++++k++w++
   XP_016511320.1  87 RGNITLEEQLVILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 130
                      7999******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.7642985IPR017930Myb domain
SuperFamilySSF466891.56E-3131128IPR009057Homeodomain-like
SMARTSM007173.5E-163383IPR001005SANT/Myb domain
PfamPF002491.9E-173481IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-233588IPR009057Homeodomain-like
CDDcd001672.90E-123681No hitNo description
SMARTSM007171.4E-1386134IPR001005SANT/Myb domain
PROSITE profilePS5129418.2186136IPR017930Myb domain
PfamPF002494.6E-1487130IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2289135IPR009057Homeodomain-like
CDDcd001676.76E-1091130No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MDHHHVKVGL SRGGNYNKNN NHQQQHEEDM DLRRGPWTAE EDFTLINYIA KHGEGRWNSL  60
ARCAGLKRTG KSCRLRWLNY LRPDVRRGNI TLEEQLVILE LHSRWGNRWS KIAQHLPGRT  120
DNEIKNYWRT RVQKHAKQLK CDVNSKQFKD TMRYLWMPTL VERIQAAATT NSNQVTINPN  180
NNNAVNKPRM SENYSISSAA SSENSFGTPV SDLTDCCYNY PPVITNNQQD YFYQTTQLRE  240
SLTIPTGLEF HTAMDQQNMS QWMDGGNFSD NLWNIEDMWF IQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-262212815120MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009791846.10.0PREDICTED: transcription factor MYB108-like
RefseqXP_016511320.10.0PREDICTED: transcription factor MYB108-like
SwissprotQ9FGY31e-91MYB78_ARATH; Transcription factor MYB78
TrEMBLA0A1S4DCZ60.0A0A1S4DCZ6_TOBAC; transcription factor MYB108-like
TrEMBLA0A1U7XQE90.0A0A1U7XQE9_NICSY; transcription factor MYB108-like
STRINGXP_009791846.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13972375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.13e-87myb domain protein 78
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]