PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016511122.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 355aa    MW: 40732.5 Da    PI: 9.7118
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016511122.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26.2e-1366118154
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++ +hn+ Er+RR+++N  +++Lr+llP a + ++kKls  +++  + eYI +L
  XP_016511122.1  66 KKLSHNASERNRRKKMNFLYSTLRSLLPAA-NHQKKKLSFPATVSYVQEYIPEL 118
                     6789*************************7.578888**************888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.71965118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-1166132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-1366135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-1066118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.14E-966123No hitNo description
SMARTSM003531.5E-671124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MLVFSSCIFP NMNTEWSFEE PQNYDQQNNI LQNEITNDSF EGLHIDNIQY SYSKEKSFDN  60
QSLMAKKLSH NASERNRRKK MNFLYSTLRS LLPAANHQKK KLSFPATVSY VQEYIPELKK  120
EIERLSQTKD LLLSTILSKK ADSLVQPNNY NNKRNTTSSA SSTSIFASPL CNGQVLVHIS  180
TTQTNGFPIS EAFQTLEEDG ILLLNATSFK SFGDKIFHSL HFQGAAFGLL RLAARRLYCS  240
PTTPFSRFRQ LPFRPPLLRE SLLLSFPLAT KIFQFAWFSL ACPWIQQQFE RLPYSGISGS  300
MLIXLPFRSP LLRESLLLSF PLATKMFQFA WFSLACPWIQ QQFERLPYSG IMISG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBA0000421e-132BA000042.1 Nicotiana tabacum mitochondrial DNA, complete genome.
GenBankKJ8654091e-132KJ865409.1 Capsicum annuum cultivar CMS line FS4401 mitochondrion, complete genome.
GenBankKJ8654101e-132KJ865410.1 Capsicum annuum cultivar Jeju mitochondrion, complete genome.
GenBankKR0711211e-132KR071121.1 UNVERIFIED: Nicotiana tabacum strain ms zhongyan100 mitochondrion sequence.
GenBankKR7800361e-132KR780036.1 Nicotiana tabacum cultivar zhongyan 100 mitochondrion, complete genome.
GenBankKT9979641e-132KT997964.1 Nicotiana sylvestris cultivar TW 137 mitochondrion, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016511122.10.0PREDICTED: transcription factor bHLH101-like
TrEMBLA0A1S4DCF50.0A0A1S4DCF5_TOBAC; transcription factor bHLH101-like
STRINGXP_009600422.11e-160(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22262256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.11e-35bHLH family protein