PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016511097.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 204aa    MW: 23175.9 Da    PI: 8.2305
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016511097.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95.2e-1899149255
             AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIr p     k +r +lg++ t+e+Aa a+++a+ k++g
  XP_016511097.1  99 RYRGVRRRP-WGKFAAEIRNP---DrKGARLWLGTYETPEDAALAYDQAAYKIRG 149
                     7********.**********8...3245*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-2399158IPR016177DNA-binding domain
PROSITE profilePS5103224.30299157IPR001471AP2/ERF domain
SMARTSM003801.8E-3599163IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-3199158IPR001471AP2/ERF domain
CDDcd000183.86E-3099159No hitNo description
PfamPF008479.8E-1499149IPR001471AP2/ERF domain
PRINTSPR003672.5E-13100111IPR001471AP2/ERF domain
PRINTSPR003672.5E-13139159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MYEQTTISDS DLSVLENIKF HLLNDTDFSQ IFSTFDQCFS NAENINSPNS SFGSSPTAEI  60
SWGDMLTSIN SSWEPVNKLE HKEEHVVARG VHAPQDWNRY RGVRRRPWGK FAAEIRNPDR  120
KGARLWLGTY ETPEDAALAY DQAAYKIRGS KARLNFPHLI GSNISEPVRV APRRRCLSPE  180
ISSSIFSSSF VENIPLKKRK LAEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-27100157360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A5e-27100163669ATERF1
3gcc_A5e-27100163669ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8281530.0AB828153.1 Nicotiana tabacum ERF91 mRNA for ethylene response factor 91, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016511097.11e-151PREDICTED: ethylene-responsive transcription factor 13-like
SwissprotQ8L9K16e-44ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLA0A1S4DCD21e-150A0A1S4DCD2_TOBAC; ethylene-responsive transcription factor 13-like
STRINGXP_009593488.11e-148(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.11e-44ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]