PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016511042.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 377aa    MW: 42456.2 Da    PI: 4.5126
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016511042.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-19130179255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ kl+g
  XP_016511042.1 130 KFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAAMVYDNAAIKLRG 179
                     89*******.**********82....35*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-29129186IPR001471AP2/ERF domain
CDDcd000184.08E-33130186No hitNo description
SuperFamilySSF541712.22E-21130186IPR016177DNA-binding domain
SMARTSM003805.3E-38130195IPR001471AP2/ERF domain
PROSITE profilePS5103223.657130187IPR001471AP2/ERF domain
PfamPF008471.0E-12130179IPR001471AP2/ERF domain
PRINTSPR003674.3E-10131142IPR001471AP2/ERF domain
PRINTSPR003674.3E-10153169IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MDHNILCPIK YTEHKKTIRK VTKPSFVKPK KITETRKSSE YNPTIPRTVR ISITDPDATD  60
SSSDEEELFG RKRVKRYINE ISIETSPIND VKSLNSGKAI KKRAAEASTP KQKALKVKVA  120
QPPPDGTVRK FRGVRQRPWG KWAAEIRDPA RRVRLWLGTY DTAEEAAMVY DNAAIKLRGP  180
DALTNFITPP TKPEEINVAS NSGYESGDES HNLSSPTSVL RFRTSQSSEE AEQQSGSEPI  240
LEEAKGDVCC PLVEEEPVLY SMDNSEQTVE HLECQGETSM IIPDYSHDYL PTDVPFLDDF  300
FNFEAAEQTL FDDTTSFAND LCTSYDDVSS WDFANDLLLD HEIVKFEDSF QDLGALEVDN  360
YFRDIGDFSS VDALMAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-21129186159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A5e-21129186462ATERF1
3gcc_A5e-21129186462ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755183e-31HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009624576.10.0PREDICTED: ethylene-responsive transcription factor CRF4-like
RefseqXP_016511042.10.0PREDICTED: ethylene-responsive transcription factor CRF4-like
TrEMBLA0A1S4DC780.0A0A1S4DC78_TOBAC; ethylene-responsive transcription factor CRF4-like
STRINGXP_009624576.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.14e-66cytokinin response factor 4