PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016510944.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 238aa    MW: 26110.3 Da    PI: 9.9299
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016510944.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF481.6e-151258248
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                    +i  ++ r vtfskRr+g++KKA EL  +++ +va ++fs+tg+ y+
  XP_016510944.1 12 KITKETSRMVTFSKRRKGLFKKAGELESMTGSRVAAVVFSPTGRPYT 58
                    688999*************************************9776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-20362IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.381363IPR002100Transcription factor, MADS-box
CDDcd001208.51E-22458No hitNo description
SuperFamilySSF554559.81E-19477IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-13525IPR002100Transcription factor, MADS-box
PfamPF003191.1E-201258IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-132540IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-134061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MGTGKKKIQI EKITKETSRM VTFSKRRKGL FKKAGELESM TGSRVAAVVF SPTGRPYTCG  60
NVTCAIERHF SSFSEPLSSG LNSHHSNSDD VSGSSSGPRS SPSPRNGLRD WLEDIDVEEC  120
QNLNQLLLLK EQLEGTREKL ASEDSECFQA LFMTGRPVPK PLSSSSGSRH KIVYQPALAS  180
TSKQLGGSDQ DRARTEIELK PKQASSSKIE LTDKNRCNPT RKNLDINHGK AGSSWVSH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016510944.11e-176PREDICTED: MADS-box transcription factor 23-like
TrEMBLA0A1S4DCL71e-175A0A1S4DCL7_TOBAC; MADS-box transcription factor 23-like
STRINGXP_009597802.11e-109(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23371757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.11e-11AGAMOUS-like 29