PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016510932.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 375aa    MW: 41584.8 Da    PI: 4.7962
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016510932.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63.2e-18105154255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+G+r+++ +g+W+AeIrdp++     r++lg+f +aeeAa+a++  +++++g
  XP_016510932.1 105 QYRGIRQRP-WGKWAAEIRDPTK---GIRVWLGTFNSAEEAARAYDIEARRIRG 154
                     69*******.**********964...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.67105162IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-31105164IPR001471AP2/ERF domain
SMARTSM003805.3E-37105168IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-21105164IPR016177DNA-binding domain
CDDcd000186.46E-32105163No hitNo description
PfamPF008472.3E-10106152IPR001471AP2/ERF domain
PRINTSPR003675.9E-11106117IPR001471AP2/ERF domain
PRINTSPR003675.9E-11128144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MCGGAILSDL VPPSRTSRRL TADLLWGTSD LSKKKKNPSN YHSKPLRSKF FELDDEFEAD  60
FQDFKDYADD VDEVKAFAFH GSKSVKSDDS SCNADKSSKR KRKNQYRGIR QRPWGKWAAE  120
IRDPTKGIRV WLGTFNSAEE AARAYDIEAR RIRGKKAKVN FPDEAPVSSS RRVVKLNPQE  180
ALHKESSNIV QANTTFTNNF GCGSDDSLSF VEEKPTAKQY GYEDVSFTAG DMGLNSFSPS  240
AGTNVYFNSD EGSNTFDCSD FGWGEPCSRS PEISSVLSAV LESNGTQFHE DARPEKKLKS  300
CSDNSLPDDG NTVNKLSEEL SAFESQMKFL QIPYLEGNWD ASVEALLNAD ATQDGGNAMD  360
LWSFDDVPSL MGGVY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-21105162260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016510932.10.0PREDICTED: ethylene-responsive transcription factor RAP2-12-like
TrEMBLA0A1S4DBX50.0A0A1S4DBX5_TOBAC; ethylene-responsive transcription factor RAP2-12-like
STRINGXP_009794756.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14462466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.32e-63related to AP2 12