PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016510911.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 89aa MW: 9968.23 Da PI: 4.4866 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 19 | 2.5e-06 | 14 | 54 | 14 | 54 |
HHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHH CS HLH 14 driNsafeeLrellPkaskapskK.lsKaeiLekAveYIksL 54 d+iN+ +L++llP++ + +++ + i+e++++YI++L XP_016510911.1 14 DEINDLVLKLQSLLPNS-SSRCTStVPAPKIVEETCNYIRML 54 78**************6.36777779999***********99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.743 | 1 | 54 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.42E-8 | 13 | 73 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.9E-6 | 13 | 69 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 89 aa Download sequence Send to blast |
MSSSRRSSSR FSQDEINDLV LKLQSLLPNS SSRCTSTVPA PKIVEETCNY IRMLHNEVDD 60 LSERLSQILA SVDTNTVDLL DTLISLLQQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Atypical and probable non DNA-binding bHLH transcription factor required for MONOPTEROS-dependent root initiation in embryo. Promotes the correct definition of the hypophysis cell division plane. Transcriptionally controlled by MONOPTEROS. Moves from its site of synthesis in pro-embryos cells into the hypophysis. Regulates brassinosteroid (BR) signaling by sequestering negative BR signaling components. May function as positive regulator of gibberellin signaling. May play a role in the regulation of light signaling and possibly auxin signaling. {ECO:0000269|PubMed:16527868, ECO:0000269|PubMed:20023194, ECO:0000269|PubMed:20220754, ECO:0000269|PubMed:22339648}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by exogenous gibberellin. {ECO:0000269|PubMed:16527868}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009616651.1 | 2e-56 | PREDICTED: transcription factor ILI5-like | ||||
Refseq | XP_016510911.1 | 2e-56 | PREDICTED: transcription factor ILI5-like | ||||
Swissprot | Q9CA64 | 3e-20 | PRE3_ARATH; Transcription factor PRE3 | ||||
TrEMBL | A0A1S4DBY2 | 5e-55 | A0A1S4DBY2_TOBAC; transcription factor ILI5-like | ||||
STRING | XP_009616651.1 | 8e-56 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA353 | 24 | 161 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74500.1 | 4e-22 | activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 |
Publications ? help Back to Top | |||
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