PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016510647.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 650aa MW: 69592.9 Da PI: 6.5665 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 53.1 | 5.5e-17 | 450 | 496 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN++++ L++l+P++ K++Ka++L +A+eY+k Lq XP_016510647.1 450 VHNLSERRRRDRINEKMSALQDLIPNC-----NKVDKASMLDEAIEYLKTLQ 496 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 4.62E-18 | 442 | 500 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.7E-21 | 443 | 504 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.66E-21 | 443 | 512 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.425 | 446 | 495 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-14 | 450 | 496 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.2E-19 | 452 | 501 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 650 aa Download sequence Send to blast |
MPLSEFLKMA RGKLESGQEK RSSTTDPSSS LEDELVELVW ENGQIVMQSR SSRAKKSPTF 60 INLPSSSLRV KDKFTGNSST TKIGKFGVMD SMFDNMPLSV PNDEMELTEE DEMVPWLSYS 120 ANDSPQQDYH SPLLPEISGL TVNEPSGRRG FASMDKRGIS NQMNGASHSV PIHNIVNSEQ 180 GNASKLSPST FNLLCSGAPK KSSAPILPLG SRISDIISSN TSCNMPVSTF GYSNSSQASA 240 GVIKSMKMQK QNIPGNSSSL LNFAHFSRPI TGGSAVSGSS TIGARGNIER ENGGSSRNRV 300 SEVPFESYFS SEKENDVHSP PYMASSKVES KGSVGLHERA CPIEQSDNLC GDSPSNNDMS 360 RDQFTGANAI KEFPDGERNV EPVVVCSSVC SGSSAERASS DHPRTLKRKT RDNEESEFQS 420 EDVEEESVGI KSAYPARGGA GSKRSRAAEV HNLSERRRRD RINEKMSALQ DLIPNCNKVD 480 KASMLDEAIE YLKTLQVQVQ MMSMGAGLCA PPMMFPAGIQ YMHAANVPQF SPMGLGMGMG 540 FGMGKLEMNG GSPGCSIYPI PTMQGAHLHS PPVSGSATFP GVAGCNLHSF RHPGQGLPVS 600 VPPASLVPLA GQPSTNAAVG LNITTAGVHT DVRNTSTLDP ETKDALRTHI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 454 | 459 | ERRRRD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009794217.1 | 0.0 | PREDICTED: transcription factor PIF3-like | ||||
Refseq | XP_016510646.1 | 0.0 | PREDICTED: transcription factor PIF3-like | ||||
Refseq | XP_016510647.1 | 0.0 | PREDICTED: transcription factor PIF3-like | ||||
TrEMBL | A0A1S4DB63 | 0.0 | A0A1S4DB63_TOBAC; transcription factor PIF3-like | ||||
TrEMBL | A0A1U7XQ57 | 0.0 | A0A1U7XQ57_NICSY; transcription factor PIF3-like | ||||
STRING | XP_009794217.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 7e-39 | phytochrome interacting factor 3 |