PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016510646.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 650aa    MW: 69592.9 Da    PI: 6.5665
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016510646.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH53.15.5e-17450496455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  ErrRRdriN++++ L++l+P++      K++Ka++L +A+eY+k Lq
  XP_016510646.1 450 VHNLSERRRRDRINEKMSALQDLIPNC-----NKVDKASMLDEAIEYLKTLQ 496
                     6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.62E-18442500No hitNo description
Gene3DG3DSA:4.10.280.104.7E-21443504IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-21443512IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.425446495IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-14450496IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-19452501IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MPLSEFLKMA RGKLESGQEK RSSTTDPSSS LEDELVELVW ENGQIVMQSR SSRAKKSPTF  60
INLPSSSLRV KDKFTGNSST TKIGKFGVMD SMFDNMPLSV PNDEMELTEE DEMVPWLSYS  120
ANDSPQQDYH SPLLPEISGL TVNEPSGRRG FASMDKRGIS NQMNGASHSV PIHNIVNSEQ  180
GNASKLSPST FNLLCSGAPK KSSAPILPLG SRISDIISSN TSCNMPVSTF GYSNSSQASA  240
GVIKSMKMQK QNIPGNSSSL LNFAHFSRPI TGGSAVSGSS TIGARGNIER ENGGSSRNRV  300
SEVPFESYFS SEKENDVHSP PYMASSKVES KGSVGLHERA CPIEQSDNLC GDSPSNNDMS  360
RDQFTGANAI KEFPDGERNV EPVVVCSSVC SGSSAERASS DHPRTLKRKT RDNEESEFQS  420
EDVEEESVGI KSAYPARGGA GSKRSRAAEV HNLSERRRRD RINEKMSALQ DLIPNCNKVD  480
KASMLDEAIE YLKTLQVQVQ MMSMGAGLCA PPMMFPAGIQ YMHAANVPQF SPMGLGMGMG  540
FGMGKLEMNG GSPGCSIYPI PTMQGAHLHS PPVSGSATFP GVAGCNLHSF RHPGQGLPVS  600
VPPASLVPLA GQPSTNAAVG LNITTAGVHT DVRNTSTLDP ETKDALRTHI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1454459ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009794217.10.0PREDICTED: transcription factor PIF3-like
RefseqXP_016510646.10.0PREDICTED: transcription factor PIF3-like
RefseqXP_016510647.10.0PREDICTED: transcription factor PIF3-like
TrEMBLA0A1S4DB630.0A0A1S4DB63_TOBAC; transcription factor PIF3-like
TrEMBLA0A1U7XQ570.0A0A1U7XQ57_NICSY; transcription factor PIF3-like
STRINGXP_009794217.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49652437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.27e-39phytochrome interacting factor 3