PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016510524.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LSD | ||||||||
Protein Properties | Length: 175aa MW: 18138 Da PI: 8.291 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 40.3 | 5.1e-13 | 7 | 30 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 C+gCrt+L YPrGA++V+Ca+C++ XP_016510524.1 7 CSGCRTILLYPRGATNVCCAVCNA 30 **********************97 PP | |||||||
2 | zf-LSD1 | 47.4 | 3.1e-15 | 46 | 70 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+ PrGA+sVRCa+C+tV XP_016510524.1 46 CGGCRTLLMHPRGATSVRCACCHTV 70 ************************9 PP | |||||||
3 | zf-LSD1 | 42.8 | 8.7e-14 | 84 | 107 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+Crt+L+YP GApsV+Ca+C+ XP_016510524.1 84 CGNCRTMLMYPCGAPSVKCAICHY 107 **********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 6.6E-13 | 4 | 32 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 3.2E-11 | 7 | 30 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 2.2E-17 | 43 | 73 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.5E-13 | 46 | 70 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 3.7E-14 | 81 | 111 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 3.8E-13 | 84 | 108 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MQSQLVCSGC RTILLYPRGA TNVCCAVCNA LTPVPPPGME MAQLICGGCR TLLMHPRGAT 60 SVRCACCHTV NLVPGPNQFA HVNCGNCRTM LMYPCGAPSV KCAICHYITH VNAGDGRVHV 120 PVHTPNGGAT SSAGPTSSTA TARSQNQTVV VQNPMSLDES GKLVSNVVVG VTTTT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975514 | 9e-39 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009783613.1 | 1e-123 | PREDICTED: protein LOL2-like isoform X1 | ||||
Refseq | XP_016510524.1 | 1e-123 | PREDICTED: protein LOL2-like | ||||
Swissprot | Q2QMB3 | 7e-68 | LOL2_ORYSJ; Protein LOL2 | ||||
TrEMBL | A0A1S4DBD8 | 1e-122 | A0A1S4DBD8_TOBAC; protein LOL2-like | ||||
TrEMBL | A0A1U7WYC9 | 1e-122 | A0A1U7WYC9_NICSY; protein LOL2-like isoform X1 | ||||
STRING | XP_009783613.1 | 1e-122 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1679 | 24 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.7 | 2e-55 | LSD family protein |
Publications ? help Back to Top | |||
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