PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016510488.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 212aa MW: 24621.4 Da PI: 7.2339 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.1 | 4.8e-09 | 25 | 68 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 WT Ed+l+ +a ++ + +W +Ia++++ g+t++++ ++ XP_016510488.1 25 TWTRFEDKLFEQALVMYSENdveRWQKIANRVP-GKTAEDVMAHY 68 7********************************.********998 PP | |||||||
2 | Myb_DNA-binding | 44.4 | 3.9e-14 | 121 | 165 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + ++G+g+W++I+r + +Rt+ q+ s+ qky XP_016510488.1 121 PWTEEEHRLFLIGLDKYGKGDWRSISRNVVVTRTPTQVASHAQKY 165 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 7.596 | 21 | 75 | IPR017884 | SANT domain |
SMART | SM00717 | 1.3E-7 | 22 | 74 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-5 | 24 | 72 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.09E-7 | 25 | 68 | No hit | No description |
Pfam | PF00249 | 1.7E-7 | 25 | 68 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.05E-11 | 26 | 78 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.268 | 114 | 170 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.93E-17 | 116 | 171 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.2E-17 | 117 | 169 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.3E-11 | 118 | 164 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.3E-11 | 118 | 168 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.19E-9 | 121 | 165 | No hit | No description |
Pfam | PF00249 | 4.3E-12 | 121 | 165 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MMYTTNNRWM IGSDSTATMI HSNSTWTRFE DKLFEQALVM YSENDVERWQ KIANRVPGKT 60 AEDVMAHYDA LVHDVFEIDS GRVDPPSYPD DAFDWESDSK TSQISFGSNK KHEVERKKGT 120 PWTEEEHRLF LIGLDKYGKG DWRSISRNVV VTRTPTQVAS HAQKYYLRQQ SMKKERKRSS 180 IHDITTAVDT KTVPPQNCLQ NQGGYQNFNF PM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 3e-12 | 17 | 100 | 2 | 85 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00055 | PBM | Transfer from AT5G04760 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT012856 | 0.0 | BT012856.1 Lycopersicon esculentum clone 113942F, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009796939.1 | 1e-161 | PREDICTED: transcription factor DIVARICATA-like | ||||
Refseq | XP_016510488.1 | 1e-161 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q9FNN6 | 3e-58 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A1S4DAV2 | 1e-159 | A0A1S4DAV2_TOBAC; transcription factor DIVARICATA-like | ||||
TrEMBL | A0A1U7YCH2 | 1e-159 | A0A1U7YCH2_NICSY; transcription factor DIVARICATA-like | ||||
STRING | XP_009796939.1 | 1e-160 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4547 | 22 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 3e-74 | MYB family protein |
Publications ? help Back to Top | |||
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