PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016510453.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 399aa    MW: 44772.2 Da    PI: 7.1183
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016510453.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS445.24.6e-136213991374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l+++L++cA+a s+gdl  aq+l+++l++++s +g+p+qRl ay++e+L arla s+s++yk+ +++e +   s e l+++++++ev+P++kf++
  XP_016510453.1  21 LKHVLIACAKAESDGDLLTAQWLISELRQMVSVSGEPIQRLGAYILEGLVARLAASGSSIYKSQRCKEPA---SFELLSYMHILHEVCPYFKFGY 112
                     689******************************************************************9...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     + aN aI ea++ e+rvHiiDf+isqG QW++L+qa+a+Rp+gpp++RiTg+++++s   +   l+ +g+rL+ +Ae+++vpfef++ +a +++d
  XP_016510453.1 113 MSANGAIAEAMKDEQRVHIIDFQISQGSQWVTLIQAFAARPGGPPHIRITGIDDSKSAyaRGGGLNIVGKRLSTLAESFKVPFEFHA-AAISTSD 206
                     ******************************************************888899999************************.8999*** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak........l 275
                     ++le+L ++pgEalaVn+++ lh+++desvs+e++rd++++lvksl+Pkvv++veqe+++n++ F+ rfle+l+yy+a+f+s++a+        l
  XP_016510453.1 207 VQLENLGIRPGEALAVNFAFVLHHMPDESVSTENHRDRLIRLVKSLNPKVVTLVEQESNTNTAAFFPRFLETLDYYTAMFESIDATlxlnqlmrL 301
                     *************************************************************************************9999999999 PP

            GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                     +r+++eri+vE+++l+++ivn++aceg er+erhe l+kW++r+++aGF+p+pls+ +++++k+l++++ +  yr+ee++g+l+lgW++r Lv+ 
  XP_016510453.1 302 SRAHKERINVEQHCLAKDIVNIIACEGIERVERHELLGKWKSRFRMAGFSPYPLSSLVNSTIKALVENYCD-KYRLEERDGALYLGWMNRDLVAS 395
                     9999*****************************************************************95.5********************** PP

            GRAS 371 SaWr 374
                     +aW+
  XP_016510453.1 396 CAWK 399
                     ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.7031380IPR005202Transcription factor GRAS
PfamPF035141.6E-13321399IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MTSPEIGCWR QMLEAIPRGD LKHVLIACAK AESDGDLLTA QWLISELRQM VSVSGEPIQR  60
LGAYILEGLV ARLAASGSSI YKSQRCKEPA SFELLSYMHI LHEVCPYFKF GYMSANGAIA  120
EAMKDEQRVH IIDFQISQGS QWVTLIQAFA ARPGGPPHIR ITGIDDSKSA YARGGGLNIV  180
GKRLSTLAES FKVPFEFHAA AISTSDVQLE NLGIRPGEAL AVNFAFVLHH MPDESVSTEN  240
HRDRLIRLVK SLNPKVVTLV EQESNTNTAA FFPRFLETLD YYTAMFESID ATLXLNQLMR  300
LSRAHKERIN VEQHCLAKDI VNIIACEGIE RVERHELLGK WKSRFRMAGF SPYPLSSLVN  360
STIKALVENY CDKYRLEERD GALYLGWMNR DLVASCAWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-59253998375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016510453.10.0PREDICTED: LOW QUALITY PROTEIN: scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A1S4DAR80.0A0A1S4DAR8_TOBAC; LOW QUALITY PROTEIN: scarecrow-like transcription factor PAT1
STRINGXP_009590821.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68124111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]