PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016510285.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 449aa MW: 49106.7 Da PI: 6.4146 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.6 | 2e-20 | 220 | 269 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f+tae Aa+a+++a+++++g XP_016510285.1 220 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 269 7********.**********7.....337*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 25.712 | 220 | 277 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.0E-37 | 220 | 283 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-22 | 220 | 278 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 9.4E-33 | 220 | 278 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.0E-14 | 220 | 269 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-11 | 221 | 232 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.06E-14 | 228 | 279 | No hit | No description |
PRINTS | PR00367 | 1.3E-11 | 243 | 259 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 449 aa Download sequence Send to blast |
MCLLIKVANP GESGEHDRIP STGGDSESTT TTTEGGIPQL YEQLQSQSQS FEEMLRQQIQ 60 QETEYLMSSS ATPMFSRYSQ TREMSAMVTA LTHVVSGRRE GEWTYRPDIS AGAVTTSFAG 120 GSSIYSASSP SSSSSGSWAG QKRRRDQEES VAAEQVQRVY GAFGEFRGGE SSSSVKTEAS 180 SMVAPPTTTS TTTTTTTAAQ TPPEPAEGGG AEETGERRRR YRGVRQRPWG KWAAEIRDPH 240 KAARVWLGTF DTAEAAARAY DEAALRFRGN RAKLNFPENV RILPQQQQQQ PQATTRSAIS 300 SSSAASQFPL MAAATTPSPF FQTYQPQQQQ LPFQSSEMVR DYWEYSQLLQ NPGEFHLQQQ 360 PSALLEQMLF ASSSMGLLQS HTFPSYSSSS SLATSSAASS PAYPLFYSAQ QSRFFQPPQS 420 THQNQTSSSS SSFPAPFWTS STHYPPSSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-22 | 219 | 280 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 215 | 220 | ERRRRY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ538423 | 1e-86 | AJ538423.1 Nicotiana tabacum cDNA-AFLP-fragment BC1-M43-023. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016510285.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ABR1-like isoform X2 | ||||
TrEMBL | A0A1S4DA11 | 0.0 | A0A1S4DA11_TOBAC; ethylene-responsive transcription factor ABR1-like isoform X2 | ||||
STRING | XP_009606637.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 1e-18 | ethylene response factor 110 |