PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016510284.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 450aa MW: 49235.8 Da PI: 6.1874 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.6 | 2e-20 | 221 | 270 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f+tae Aa+a+++a+++++g XP_016510284.1 221 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 270 7********.**********7.....337*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 7.0E-37 | 221 | 284 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.0E-14 | 221 | 270 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-22 | 221 | 279 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 9.5E-33 | 221 | 279 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.712 | 221 | 278 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-11 | 222 | 233 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.01E-14 | 229 | 280 | No hit | No description |
PRINTS | PR00367 | 1.3E-11 | 244 | 260 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 450 aa Download sequence Send to blast |
MCLLIKVANP GESGEHDRIP STGGDSESTT TTTEGGIPQL YEQLQSQSQS FEEMLRQQIQ 60 QETEYLMSSS ATPMFSRYSQ TREMSAMVTA LTHVVSGRRE GEWTYRPDIS AGAVTTSFAG 120 GSSIYSASSP SSSSSGSWAG QKRRRDQEES VAAEQVQRVY GAFGEFRGGE SSSSVKTEEA 180 SSMVAPPTTT STTTTTTTAA QTPPEPAEGG GAEETGERRR RYRGVRQRPW GKWAAEIRDP 240 HKAARVWLGT FDTAEAAARA YDEAALRFRG NRAKLNFPEN VRILPQQQQQ QPQATTRSAI 300 SSSSAASQFP LMAAATTPSP FFQTYQPQQQ QLPFQSSEMV RDYWEYSQLL QNPGEFHLQQ 360 QPSALLEQML FASSSMGLLQ SHTFPSYSSS SSLATSSAAS SPAYPLFYSA QQSRFFQPPQ 420 STHQNQTSSS SSSFPAPFWT SSTHYPPSSS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-22 | 220 | 281 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 216 | 221 | ERRRRY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AJ538423 | 1e-86 | AJ538423.1 Nicotiana tabacum cDNA-AFLP-fragment BC1-M43-023. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016510284.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ABR1-like isoform X1 | ||||
TrEMBL | A0A1S4DAP3 | 0.0 | A0A1S4DAP3_TOBAC; ethylene-responsive transcription factor ABR1-like isoform X1 | ||||
STRING | XP_009606637.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4322 | 21 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G50080.1 | 1e-18 | ethylene response factor 110 |