PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016510281.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Dof | ||||||||
Protein Properties | Length: 357aa MW: 38612.8 Da PI: 9.7946 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.1 | 8.1e-38 | 71 | 131 | 3 | 63 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 e+ +kcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalr vPvGgg+r+nk+sss XP_016510281.1 71 EAVQKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSSS 131 56789****************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 7.0E-35 | 54 | 128 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 5.2E-32 | 73 | 128 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.994 | 74 | 128 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 76 | 112 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MVFSSISAYL DPANWQQQAG HSIPNPQFQS VQPPRPLVAP PPTQTHVGGG GTIRPGSMAD 60 RARLANIPMA EAVQKCPRCE STNTKFCYFN NYSLSQPRHF CKTCRRYWTR GGALRSVPVG 120 GGCRRNKRSS SSTKATNNNI NTSKSPTSST STGGCRQIAT NSGSTSNNNS FSSPTSAASL 180 LGLMTPQIHH PLRFMSPLGQ LTDHHFTPND NNINMNYSAI NSSLSAPVAG NNESMNFQLG 240 MGGNLEQWRL QQQVANQFPN IYGGLDSSSA SGFYPFHPTH YTSNDAGGVT VTSTQIRPKI 300 TNPMLTQLAL MKMEDNHEHS TLSRQFVGNP GNENWSSSSA WNELSASFSS SSTSNAL |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00295 | DAP | Transfer from AT2G37590 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009627605.1 | 0.0 | PREDICTED: dof zinc finger protein DOF2.4-like | ||||
Refseq | XP_016510281.1 | 0.0 | PREDICTED: dof zinc finger protein DOF2.4-like | ||||
TrEMBL | A0A1S4DA64 | 0.0 | A0A1S4DA64_TOBAC; dof zinc finger protein DOF2.4-like | ||||
STRING | XP_009627605.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1917 | 24 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37590.1 | 1e-48 | DNA binding with one finger 2.4 |