PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016510115.1
Common NameNtERF#230
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 223aa    MW: 23843.9 Da    PI: 10.0726
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016510115.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.9e-192776255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +y+GVr ++ +gr++AeIrdp   g+++r++lg+f+ta eAaka++ a++ l+g
  XP_016510115.1 27 HYRGVRKRP-WGRYAAEIRDP---GQKTRVWLGTFDTAVEAAKAYDTAARLLRG 76
                    6********.**********8...557***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.552784IPR001471AP2/ERF domain
CDDcd000181.72E-302783No hitNo description
SuperFamilySSF541714.12E-212785IPR016177DNA-binding domain
SMARTSM003802.1E-372790IPR001471AP2/ERF domain
PfamPF008473.7E-122776IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-302784IPR001471AP2/ERF domain
PRINTSPR003671.4E-102839IPR001471AP2/ERF domain
PRINTSPR003671.4E-105066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MAENVHLAGT VAVPTANGGG VCSDEVHYRG VRKRPWGRYA AEIRDPGQKT RVWLGTFDTA  60
VEAAKAYDTA ARLLRGRRAI TNFSLTTEDN LMNTRDFMAK LSTRNHVNIN TNNHGPIKNS  120
DIGSSGGGGA VRIPLPIQNP QSRHFPVAGC SAPLQLERDR CYVEALTIAG VIVNRDPSSQ  180
KKTIDFIGGG VNGGSGRGVQ TEPPTTSTRA LNLELTLAPP GNM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-201883571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6690870.0AB669087.1 Nicotiana tabacum NtERF#230 gene for ethylene response factor #230, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016510115.11e-165PREDICTED: ethylene-responsive transcription factor 8-like
TrEMBLA0A1S4D9J61e-163A0A1S4D9J6_TOBAC; ethylene-responsive transcription factor 8-like
STRINGXP_009769627.11e-145(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1535068
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.13e-33erf domain protein 9
Publications ? help Back to Top
  1. Ogata T,Kida Y,Tochigi M,Matsushita Y
    Analysis of the cell death-inducing ability of the ethylene response factors in group VIII of the AP2/ERF family.
    Plant Sci., 2013. 209: p. 12-23
    [PMID:23759099]